Factsheet for TraesCS6D01G282200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1
TraesCS1B01G364800.1
TraesCS1D01G353300.1
TraesCS3A01G282800.1
TraesCS3B01G316500.1
TraesCS3D01G282800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22160.1	TraesCS1A01G350500.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS1B01G364800.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS1D01G353300.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3A01G282800.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3B01G316500.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3D01G282800.1	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G331900.1	Wheat	mitochondrion	80.52	80.52
TraesCS6A01G302700.1	Wheat	mitochondrion	77.27	74.38
CDX79242	Canola	mitochondrion	7.14	61.11
HORVU6Hr1G075130.1	Barley	mitochondrion	46.75	44.44
TraesCS6D01G276200.1	Wheat	mitochondrion	41.56	43.24
TraesCS6D01G276300.1	Wheat	mitochondrion	38.96	42.55
Os02t0751300-01	Rice	mitochondrion	40.26	42.18
Zm00001d018076_P001	Maize	plastid	42.86	40.99
Zm00001d052234_P001	Maize	plastid	41.56	40.76
KXG30742	Sorghum	plastid	42.86	40.74
TraesCS7D01G183500.1	Wheat	mitochondrion	36.36	39.44
GSMUA_Achr3P04440_001	Banana	mitochondrion	31.82	37.4
GSMUA_Achr9P13000_001	Banana	mitochondrion, nucleus	35.06	36.99
GSMUA_Achr10P...	Banana	nucleus	33.12	34.69
GSMUA_Achr4P01820_001	Banana	mitochondrion	34.42	32.92
GSMUA_Achr7P17710_001	Banana	mitochondrion	32.47	32.89
GSMUA_Achr5P24390_001	Banana	cytosol	25.97	31.75
GSMUA_Achr6P02010_001	Banana	mitochondrion, nucleus	31.17	30.97
GSMUA_Achr8P18580_001	Banana	cytosol, mitochondrion, nucleus, plastid	31.17	30.19
KRH18875	Soybean	mitochondrion	27.92	30.07
GSMUA_Achr6P04060_001	Banana	mitochondrion, nucleus	29.87	29.68
TraesCS5D01G200000.1	Wheat	cytosol	31.82	29.52
CDY21344	Canola	nucleus	29.87	29.3
Bra031369.1-P	Field mustard	nucleus	29.87	29.3
CDY38242	Canola	mitochondrion, nucleus	29.87	29.3
Bra015639.1-P	Field mustard	cytosol, mitochondrion, plastid	29.22	29.22
CDX88407	Canola	cytosol, mitochondrion	29.22	29.22
CDX87485	Canola	cytosol, mitochondrion	29.22	29.22
Bra012309.1-P	Field mustard	nucleus	29.22	28.48
CDY01294	Canola	nucleus	28.57	27.85
AT1G78020.1	Thale cress	mitochondrion	29.22	27.78
PGSC0003DMT400022055	Potato	mitochondrion	24.68	27.54
Solyc12g056950.1.1	Tomato	cytosol, mitochondrion	24.68	27.54
CDY00425	Canola	nucleus	27.92	27.22
AT1G22160.1	Thale cress	mitochondrion, nucleus	25.97	27.21
KRH62389	Soybean	mitochondrion	24.03	27.21
CDY14641	Canola	mitochondrion	28.57	26.99
Bra008341.1-P	Field mustard	mitochondrion	28.57	26.99
CDY26845	Canola	mitochondrion	28.57	26.99
CDX68033	Canola	cytosol, mitochondrion	26.62	26.97
Bra003661.1-P	Field mustard	cytosol, mitochondrion	26.62	26.97
CDX79243	Canola	cytosol, plastid	19.48	26.79
KRH53114	Soybean	nucleus	26.62	26.62
KRH16681	Soybean	mitochondrion	25.32	25.83
Solyc04g072780.2.1	Tomato	nucleus	27.92	25.6
PGSC0003DMT400024491	Potato	nucleus	26.62	24.85
VIT_18s0001g05020.t01	Wine grape	extracellular, vacuole	29.22	21.63

Protein Annotations

EnsemblPlants:TraesCS6D01G282200.1	EnsemblPlantsGene:TraesCS6D01G282200	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF4
PFAM:PF04570	PFscan:PS51795	SEG:seg	MapMan:27.3.3	:	:

Description

No Description!

Coordinates

chr6D:-:389651540..389653078

Molecular Weight (calculated)

15678.6 Da

IEP (calculated)

9.048

GRAVY (calculated)

-0.412

Length

154 amino acids

Sequence
(BLAST)

001: MLGKRQRSML MRRTTSLASM PSVPKQVRQG SGGGGGDKDK PARARPSSSV SAGAVGTGGG GYPSPGRDAF AGLMITAAFL SACGFCAKPL GPGEDTYIYR
101: GEVAFCSQEC REHRIKKDEL MEQNCTITSI REAPSDQSGS GGGSGGAGDA VAAA

Best Arabidopsis Sequence Match ( AT4G39795.1 )
(BLAST)

001: MLLGNRPRPQ MQRTASITRI TIEVDGDQTA GQDSDVSMTV VDGGENYAQR FLSPVNHQRN ERKYGGRSSP SSFLVNCGFC KRGLAPGRDI YMYKGDAAFC
101: SIECREQQME HDEGKTRNRV VLSPSK

Arabidopsis Description

Protein of unknown function (DUF581) [Source:TAIR;Acc:AT4G39795]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.