Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22160.1 | CDX85250 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | CDX86386 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | CDY04058 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031369.1-P | Field mustard | nucleus | 94.9 | 94.9 |
| CDY21344 | Canola | nucleus | 94.9 | 94.9 |
| CDX79242 | Canola | mitochondrion | 9.55 | 83.33 |
| CDY01294 | Canola | nucleus | 68.79 | 68.35 |
| CDY00425 | Canola | nucleus | 64.97 | 64.56 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 59.87 | 63.95 |
| CDX68033 | Canola | cytosol, mitochondrion | 49.68 | 51.32 |
| CDX87485 | Canola | cytosol, mitochondrion | 50.32 | 51.3 |
| CDX88407 | Canola | cytosol, mitochondrion | 49.68 | 50.65 |
| CDX79243 | Canola | cytosol, plastid | 35.67 | 50.0 |
| CDY26845 | Canola | mitochondrion | 49.04 | 47.24 |
| KRH18875 | Soybean | mitochondrion | 42.68 | 46.85 |
| CDY08827 | Canola | mitochondrion | 32.48 | 46.79 |
| CDY14641 | Canola | mitochondrion | 48.41 | 46.63 |
| KRH62389 | Soybean | mitochondrion | 39.49 | 45.59 |
| GSMUA_Achr3P04440_001 | Banana | mitochondrion | 37.58 | 45.04 |
| CDY31291 | Canola | cytosol | 32.48 | 44.35 |
| KRH16681 | Soybean | mitochondrion | 42.04 | 43.71 |
| CDY33991 | Canola | mitochondrion | 31.85 | 43.48 |
| KRH53114 | Soybean | nucleus | 40.13 | 40.91 |
| GSMUA_Achr9P13000_001 | Banana | mitochondrion, nucleus | 36.94 | 39.73 |
| GSMUA_Achr10P... | Banana | nucleus | 36.31 | 38.78 |
| PGSC0003DMT400024491 | Potato | nucleus | 40.13 | 38.18 |
| TraesCS7A01G182100.1 | Wheat | mitochondrion | 33.12 | 37.68 |
| Solyc04g072780.2.1 | Tomato | nucleus | 40.13 | 37.5 |
| GSMUA_Achr7P17710_001 | Banana | mitochondrion | 35.67 | 36.84 |
| TraesCS7D01G183500.1 | Wheat | mitochondrion | 33.12 | 36.62 |
| CDY71221 | Canola | cytosol, nucleus, plastid | 22.29 | 36.46 |
| TraesCS7B01G086900.1 | Wheat | mitochondrion, nucleus | 32.48 | 36.43 |
| OQU76080 | Sorghum | cytosol | 30.57 | 35.82 |
| GSMUA_Achr5P24390_001 | Banana | cytosol | 28.66 | 35.71 |
| Os06t0223700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 31.21 | 34.51 |
| CDX72671 | Canola | cytosol | 28.03 | 33.59 |
| GSMUA_Achr6P02010_001 | Banana | mitochondrion, nucleus | 33.12 | 33.55 |
| GSMUA_Achr4P01820_001 | Banana | mitochondrion | 34.39 | 33.54 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 43.31 | 32.69 |
| GSMUA_Achr6P04060_001 | Banana | mitochondrion, nucleus | 31.21 | 31.61 |
| TraesCS5D01G200000.1 | Wheat | cytosol | 33.12 | 31.33 |
| TraesCS5A01G191000.1 | Wheat | cytosol | 32.48 | 30.72 |
| TraesCS6D01G282200.1 | Wheat | mitochondrion | 29.3 | 29.87 |
| TraesCS6B01G331900.1 | Wheat | mitochondrion | 29.3 | 29.87 |
| Zm00001d032292_P001 | Maize | mitochondrion | 35.67 | 29.63 |
| Os02t0751300-01 | Rice | mitochondrion | 27.39 | 29.25 |
| GSMUA_Achr8P18580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 29.3 | 28.93 |
| Zm00001d020264_P001 | Maize | nucleus | 33.12 | 28.73 |
| HORVU6Hr1G073620.1 | Barley | mitochondrion | 24.2 | 28.15 |
| EER96652 | Sorghum | nucleus | 35.03 | 27.92 |
| Zm00001d018076_P001 | Maize | plastid | 28.03 | 27.33 |
| Os08t0407600-01 | Rice | mitochondrion | 34.39 | 27.14 |
| EES14968 | Sorghum | mitochondrion | 34.39 | 27.14 |
| Zm00001d005657_P002 | Maize | nucleus | 30.57 | 27.12 |
| Zm00001d050285_P001 | Maize | mitochondrion | 31.85 | 27.03 |
| Zm00001d044849_P001 | Maize | plastid | 26.75 | 26.75 |
| Os09t0367900-02 | Rice | cytosol | 29.94 | 26.7 |
| TraesCS6A01G302700.1 | Wheat | mitochondrion | 26.75 | 26.25 |
| Zm00001d052234_P001 | Maize | plastid | 25.48 | 25.48 |
| KXG30742 | Sorghum | plastid | 26.11 | 25.31 |
| TraesCS6A01G295900.1 | Wheat | mitochondrion | 21.02 | 23.4 |
| TraesCS6A01G295800.1 | Wheat | mitochondrion | 20.38 | 22.7 |
| TraesCS6D01G276300.1 | Wheat | mitochondrion | 19.75 | 21.99 |
| TraesCS6A01G295600.1 | Wheat | mitochondrion | 20.38 | 21.62 |
| TraesCS6D01G276200.1 | Wheat | mitochondrion | 19.11 | 20.27 |
| HORVU6Hr1G075130.1 | Barley | mitochondrion | 19.75 | 19.14 |
| TraesCS6B01G325700.1 | Wheat | mitochondrion | 17.83 | 18.54 |
| TraesCS6B01G325800.1 | Wheat | nucleus, plastid | 19.11 | 18.52 |
Protein Annotations
| EnsemblPlants:CDY38242 | EnsemblPlantsGene:GSBRNA2T00065587001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF74 |
| PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDY38242 | ProteinID:CDY38242.1 | UniParc:UPI0004EEC9AF | UniProt:A0A078HK47 |
| MapMan:27.3.3 | : | : | : | : | : |
Description
BnaC05g17590DBnaC05g17590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HK47]
Coordinates
chrLK032419:-:251072..251848
Molecular Weight (calculated)
17783.4 Da
IEP (calculated)
9.653
GRAVY (calculated)
-0.690
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLLGKRQRS EIKRTTSLSK IKFDLNLPCE PEEPSDHQHV QTLSPRKSKL VAVDEHRQVH HGLLDQRLLP MVSPRGTQRR HSEDYSTHAG DFLRCCSLCK
101: GHLVSGRDIY MYRGDRAFCS LECRQQQITV DERKEKGVVR STVAAGSGKG ERVSAAV
101: GHLVSGRDIY MYRGDRAFCS LECRQQQITV DERKEKGVVR STVAAGSGKG ERVSAAV
001: MLLGKRQRPP IKRTTSLSEI KFDLNQPSEQ EPSDHQIQLV NVDEHRQVHQ RLLDQRLLAM VSPRGTQRRH SSDYSEDFLR SCSLCKRLLV HGRDIYMYRG
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VY80]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.