CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01406
EES19859

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22160.1	EES01406	AT3G29160.1	21798944
AT1G22160.1	EES19859	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050285_P001	Maize	mitochondrion	58.29	62.7
Os08t0407600-01	Rice	mitochondrion	56.28	56.28
GSMUA_Achr3P04440_001	Banana	mitochondrion	34.67	52.67
CDX79242	Canola	mitochondrion	4.52	50.0
EER96652	Sorghum	nucleus	48.74	49.24
GSMUA_Achr6P02010_001	Banana	mitochondrion, nucleus	35.68	45.81
GSMUA_Achr9P13000_001	Banana	mitochondrion, nucleus	33.17	45.21
CDX79243	Canola	cytosol, plastid	25.13	44.64
OQU76080	Sorghum	cytosol	29.65	44.03
GSMUA_Achr5P24390_001	Banana	cytosol	27.14	42.86
GSMUA_Achr10P...	Banana	nucleus	31.66	42.86
GSMUA_Achr7P17710_001	Banana	mitochondrion	32.66	42.76
KRH18875	Soybean	mitochondrion	29.65	41.26
KRH16681	Soybean	mitochondrion	31.16	41.06
GSMUA_Achr4P01820_001	Banana	mitochondrion	33.17	40.99
AT1G22160.1	Thale cress	mitochondrion, nucleus	29.65	40.14
Bra012309.1-P	Field mustard	nucleus	31.16	39.24
CDY01294	Canola	nucleus	31.16	39.24
CDX87485	Canola	cytosol, mitochondrion	30.15	38.96
CDX68033	Canola	cytosol, mitochondrion	29.65	38.82
CDY26845	Canola	mitochondrion	31.66	38.65
Bra008341.1-P	Field mustard	mitochondrion	31.66	38.65
CDY00425	Canola	nucleus	30.65	38.61
Bra015639.1-P	Field mustard	cytosol, mitochondrion, plastid	29.65	38.31
CDX88407	Canola	cytosol, mitochondrion	29.65	38.31
Bra003661.1-P	Field mustard	cytosol, mitochondrion	29.15	38.16
Solyc04g072780.2.1	Tomato	nucleus	32.16	38.1
CDY14641	Canola	mitochondrion	31.16	38.04
AT1G78020.1	Thale cress	mitochondrion	30.15	37.04
CDY21344	Canola	nucleus	29.15	36.94
Bra031369.1-P	Field mustard	nucleus	29.15	36.94
KRH62389	Soybean	mitochondrion	25.13	36.76
PGSC0003DMT400024491	Potato	nucleus	30.15	36.36
PGSC0003DMT400022055	Potato	mitochondrion	25.13	36.23
Solyc12g056950.1.1	Tomato	cytosol, mitochondrion	25.13	36.23
GSMUA_Achr8P18580_001	Banana	cytosol, mitochondrion, nucleus, plastid	27.64	34.59
CDY38242	Canola	mitochondrion, nucleus	27.14	34.39
GSMUA_Achr6P04060_001	Banana	mitochondrion, nucleus	26.13	33.55
KRH53114	Soybean	nucleus	25.63	33.12
KXG30742	Sorghum	plastid	24.62	30.25
VIT_18s0001g05020.t01	Wine grape	extracellular, vacuole	31.16	29.81

Protein Annotations

EnsemblPlants:EES14968	EnsemblPlantsGene:SORBI_3007G123800	EntrezGene:8070067	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF63	PFAM:PF04570	PFscan:PS51795	ProteinID:EES14968	ProteinID:EES14968.1	RefSeq:XP_002445473.1
SEG:seg	UniParc:UPI0001A87A2C	UniProt:C5YKT4	MapMan:27.3.3	:	:

Description

hypothetical protein

Coordinates

chr7:-:53053601..53057292

Molecular Weight (calculated)

20978.5 Da

IEP (calculated)

4.921

GRAVY (calculated)

-0.355

Length

199 amino acids

Sequence
(BLAST)

001: MMLGKQRSGR PSPASRQQHH MRRTTSLTEF AAPDVLADVA EEEEEDEELQ LLPAHAEAAA AADEVEAADP YGWAVGGAAA AGRADWLAAY RARAAPALAG
101: LRRNSADFSA AETAAFLRAC GLCNRRLGPG RDTFMYRGDT AFCSLECRQQ HMTIEEWKEK CALATPPTTT ADPVVPLPLP PSGGAAGSDK PAGTLTAAS

Best Arabidopsis Sequence Match ( AT1G78020.1 )
(BLAST)

001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV

Arabidopsis Description

F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.