Factsheet for PGSC0003DMT400024491

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400063153

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22160.1	PGSC0003DMT400063153	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g072780.2.1	Tomato	nucleus	87.88	86.31
CDX79242	Canola	mitochondrion	7.27	66.67
GSMUA_Achr3P04440_001	Banana	mitochondrion	41.82	52.67
PGSC0003DMT400022055	Potato	mitochondrion	41.21	49.28
AT1G22160.1	Thale cress	mitochondrion, nucleus	40.61	45.58
GSMUA_Achr9P13000_001	Banana	mitochondrion, nucleus	39.39	44.52
GSMUA_Achr6P02010_001	Banana	mitochondrion, nucleus	41.21	43.87
CDY00425	Canola	nucleus	41.82	43.67
TraesCS7A01G182100.1	Wheat	mitochondrion	36.36	43.48
GSMUA_Achr7P17710_001	Banana	mitochondrion	40.0	43.42
Bra012309.1-P	Field mustard	nucleus	41.21	43.04
CDY01294	Canola	nucleus	41.21	43.04
TraesCS7B01G086900.1	Wheat	mitochondrion, nucleus	36.36	42.86
GSMUA_Achr10P...	Banana	nucleus	38.18	42.86
Bra031369.1-P	Field mustard	nucleus	40.61	42.68
CDY21344	Canola	nucleus	40.61	42.68
AT1G78020.1	Thale cress	mitochondrion	41.21	41.98
CDX79243	Canola	cytosol, plastid	28.48	41.96
TraesCS7D01G183500.1	Wheat	mitochondrion	35.76	41.55
Bra015639.1-P	Field mustard	cytosol, mitochondrion, plastid	38.18	40.91
CDX88407	Canola	cytosol, mitochondrion	38.18	40.91
CDX87485	Canola	cytosol, mitochondrion	38.18	40.91
CDX68033	Canola	cytosol, mitochondrion	37.58	40.79
OQU76080	Sorghum	cytosol	32.73	40.3
Os06t0223700-01	Rice	cytosol, mitochondrion, nucleus, plastid	34.55	40.14
Bra003661.1-P	Field mustard	cytosol, mitochondrion	36.97	40.13
CDY38242	Canola	mitochondrion, nucleus	38.18	40.13
GSMUA_Achr4P01820_001	Banana	mitochondrion	38.79	39.75
GSMUA_Achr5P24390_001	Banana	cytosol	30.3	39.68
Bra008341.1-P	Field mustard	mitochondrion	38.79	39.26
CDY26845	Canola	mitochondrion	38.79	39.26
CDY14641	Canola	mitochondrion	38.18	38.65
PGSC0003DMT400017167	Potato	mitochondrion	36.36	38.22
GSMUA_Achr6P04060_001	Banana	mitochondrion, nucleus	32.12	34.19
PGSC0003DMT400056164	Potato	nucleus	29.7	33.79
Zm00001d020264_P001	Maize	nucleus	36.36	33.15
Zm00001d044849_P001	Maize	plastid	31.52	33.12
Zm00001d032292_P001	Maize	mitochondrion	36.97	32.28
GSMUA_Achr8P18580_001	Banana	cytosol, mitochondrion, nucleus, plastid	30.91	32.08
Os09t0367900-02	Rice	cytosol	33.94	31.82
TraesCS5D01G200000.1	Wheat	cytosol	30.91	30.72
Zm00001d005657_P002	Maize	nucleus	32.73	30.51
Zm00001d050285_P001	Maize	mitochondrion	33.94	30.27
EES14968	Sorghum	mitochondrion	36.36	30.15
TraesCS5A01G191000.1	Wheat	cytosol	30.3	30.12
Os02t0751300-01	Rice	mitochondrion	26.67	29.93
EER96652	Sorghum	nucleus	35.15	29.44
Os08t0407600-01	Rice	mitochondrion	35.15	29.15
Zm00001d018076_P001	Maize	plastid	27.88	28.57
Zm00001d052234_P001	Maize	plastid	26.67	28.03
TraesCS6B01G331900.1	Wheat	mitochondrion	26.06	27.92
HORVU6Hr1G073620.1	Barley	mitochondrion	21.82	26.67
TraesCS6D01G282200.1	Wheat	mitochondrion	24.85	26.62
KXG30742	Sorghum	plastid	26.06	26.54
TraesCS6A01G302700.1	Wheat	mitochondrion	24.85	25.62
TraesCS6A01G295900.1	Wheat	mitochondrion	20.61	24.11
TraesCS6D01G276200.1	Wheat	mitochondrion	21.21	23.65
TraesCS6A01G295600.1	Wheat	mitochondrion	21.21	23.65
TraesCS6A01G295800.1	Wheat	mitochondrion	19.39	22.7
TraesCS6D01G276300.1	Wheat	mitochondrion	18.79	21.99
TraesCS6B01G325700.1	Wheat	mitochondrion	18.79	20.53
TraesCS6B01G325800.1	Wheat	nucleus, plastid	19.39	19.75
HORVU6Hr1G075130.1	Barley	mitochondrion	16.36	16.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400024491	EnsemblPlantsGene:PGSC0003DMG400009471	EntrezGene:102578669	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059
PANTHER:PTHR33059:SF74	PFAM:PF04570	PFscan:PS51795	PGSC:PGSC0003DMG400009471	RefSeq:XP_006354015.1	SEG:seg
UniParc:UPI00029645CD	UniProt:M1AK76	MapMan:27.3.3	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009471]

Coordinates

chr4:+:62596784..62597863

Molecular Weight (calculated)

18501.0 Da

IEP (calculated)

9.787

GRAVY (calculated)

-0.718

Length

165 amino acids

Sequence
(BLAST)

001: MLLGKRTRPP MKRTSSMTEF TLDLNLNNNP DPNSSLTNYN NPFDPHNPIS PANTQQQLDQ QRLLTAPKTV SARNRRKSAD FLETSNFLKA CFLCKRRLIP
101: GRDIYMYRGD SAFCSLECRQ QQMNLDEKKD KCSLVASRKD YMTNSVAAAG KGSDVSATSE TVAAV

Best Arabidopsis Sequence Match ( AT1G78020.1 )
(BLAST)

001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV

Arabidopsis Description

F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.