Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 4
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063153 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65040.1 | PGSC0003DMT400063153 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g054760.2.1 | Tomato | mitochondrion, nucleus | 89.81 | 90.38 |
| VIT_00s0357g00010.t01 | Wine grape | mitochondrion | 27.39 | 53.09 |
| PGSC0003DMT400056164 | Potato | nucleus | 36.94 | 40.0 |
| CDY08827 | Canola | mitochondrion | 26.75 | 38.53 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 33.76 | 38.41 |
| CDY31291 | Canola | cytosol | 28.03 | 38.26 |
| CDY33991 | Canola | mitochondrion | 28.03 | 38.26 |
| VIT_00s1003g00010.t01 | Wine grape | nucleus | 45.86 | 38.1 |
| Bra031889.1-P | Field mustard | cytosol | 23.57 | 37.37 |
| AT5G65040.1 | Thale cress | mitochondrion | 26.75 | 37.17 |
| PGSC0003DMT400024491 | Potato | nucleus | 38.22 | 36.36 |
| KRH31273 | Soybean | mitochondrion | 35.67 | 29.79 |
| KRG97604 | Soybean | nucleus | 35.03 | 26.96 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400017167 | EnsemblPlantsGene:PGSC0003DMG400006700 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 |
| PFAM:PF04570 | PFscan:PS51795 | PGSC:PGSC0003DMG400006700 | UniParc:UPI000295CF3F | UniProt:M1A8M8 | MapMan:27.3.3 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400006700]
Coordinates
chr4:+:51812391..51814162
Molecular Weight (calculated)
17765.0 Da
IEP (calculated)
8.491
GRAVY (calculated)
-0.900
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGKRGRPPM RRTTSMTGIT VDLGTATESE PSDCNKPKIM VDEIKSSSEK EGLIISSVPA MVSPRYQRRI SGEGFERERA NFLRICGLCN RRLINGRDIY
101: MYRGDTAFCS MECREEQMKQ DERNDKSNIK PENHHNHSEF RSAKSEASSN NDTIAAA
101: MYRGDTAFCS MECREEQMKQ DERNDKSNIK PENHHNHSEF RSAKSEASSN NDTIAAA
001: MLLGKRQRPP IKRTTSLSEI KFDLNQPSEQ EPSDHQIQLV NVDEHRQVHQ RLLDQRLLAM VSPRGTQRRH SSDYSEDFLR SCSLCKRLLV HGRDIYMYRG
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VY80]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.