Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65040.1 | CDX85250 | AT3G29160.1 | 21798944 |
| AT5G65040.1 | CDX86386 | AT3G29160.1 | 21798944 |
| AT5G65040.1 | CDY04058 | AT3G29160.1 | 21798944 |
| AT5G65040.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031889.1-P | Field mustard | cytosol | 85.22 | 98.99 |
| CDY31291 | Canola | cytosol | 98.26 | 98.26 |
| AT5G65040.1 | Thale cress | mitochondrion | 77.39 | 78.76 |
| CDY08827 | Canola | mitochondrion | 67.83 | 71.56 |
| CDX79242 | Canola | mitochondrion | 8.7 | 55.56 |
| VIT_00s0357g00010.t01 | Wine grape | mitochondrion | 31.3 | 44.44 |
| CDY21344 | Canola | nucleus | 44.35 | 32.48 |
| CDY00425 | Canola | nucleus | 44.35 | 32.28 |
| CDY38242 | Canola | mitochondrion, nucleus | 43.48 | 31.85 |
| CDY01294 | Canola | nucleus | 43.48 | 31.65 |
| CDX87485 | Canola | cytosol, mitochondrion | 38.26 | 28.57 |
| CDX79243 | Canola | cytosol, plastid | 27.83 | 28.57 |
| CDX88407 | Canola | cytosol, mitochondrion | 38.26 | 28.57 |
| PGSC0003DMT400056164 | Potato | nucleus | 35.65 | 28.28 |
| CDY71221 | Canola | cytosol, nucleus, plastid | 23.48 | 28.12 |
| PGSC0003DMT400017167 | Potato | mitochondrion | 38.26 | 28.03 |
| CDX68033 | Canola | cytosol, mitochondrion | 36.52 | 27.63 |
| Solyc04g054760.2.1 | Tomato | mitochondrion, nucleus | 37.39 | 27.56 |
| CDX72671 | Canola | cytosol | 31.3 | 27.48 |
| CDY26845 | Canola | mitochondrion | 38.26 | 26.99 |
| CDY14641 | Canola | mitochondrion | 38.26 | 26.99 |
| VIT_00s1003g00010.t01 | Wine grape | nucleus | 44.35 | 26.98 |
| Solyc05g051860.2.1 | Tomato | nucleus | 34.78 | 26.85 |
| KRH31273 | Soybean | mitochondrion | 43.48 | 26.6 |
| KRG97604 | Soybean | nucleus | 44.35 | 25.0 |
Protein Annotations
| EnsemblPlants:CDY33991 | EnsemblPlantsGene:GSBRNA2T00055844001 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF74 |
| PFAM:PF04570 | PFscan:PS51795 | ProteinID:CDY33991 | ProteinID:CDY33991.1 | UniParc:UPI0004EDD00A | UniProt:A0A078H836 |
| MapMan:27.3.3 | : | : | : | : | : |
Description
BnaC02g43460DBnaC02g43460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H836]
Coordinates
chrLK032325:+:389394..389927
Molecular Weight (calculated)
13448.3 Da
IEP (calculated)
9.365
GRAVY (calculated)
-0.667
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLGKRHGSL IKRTTSMLMI TDDIATIYDH ASQPSDHLTM HQHHHNPTVM MATNNDDDFL RTCSLCNRNL CHRRDIYMYR GDNAFCSLDC REKQIKLDER
101: KVKNGVRAFK KTVRI
101: KVKNGVRAFK KTVRI
001: MVLGKRHGSL IKRTTSMKMI TLDTPTIYDA SQPSDHLTFH QHPHNPMVVM ASNYDDFLKT CSLCNRSLCH HRDIYMYRGN NAFCSLECRE KQIKLDEKKA
101: KTGFVTSKKP IRI
101: KTGFVTSKKP IRI
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LV75]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.