Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g067030.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65040.1 | Solyc02g067030.2.1 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400056164 | Potato | nucleus | 89.93 | 92.41 |
| VIT_00s0357g00010.t01 | Wine grape | mitochondrion | 29.53 | 54.32 |
| CDY08827 | Canola | mitochondrion | 27.52 | 37.61 |
| Bra031889.1-P | Field mustard | cytosol | 24.83 | 37.37 |
| Solyc04g054760.2.1 | Tomato | mitochondrion, nucleus | 38.26 | 36.54 |
| CDY31291 | Canola | cytosol | 28.19 | 36.52 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 32.89 | 35.51 |
| CDY33991 | Canola | mitochondrion | 26.85 | 34.78 |
| AT5G65040.1 | Thale cress | mitochondrion | 26.17 | 34.51 |
| VIT_00s1003g00010.t01 | Wine grape | nucleus | 37.58 | 29.63 |
| KRH31273 | Soybean | mitochondrion | 34.9 | 27.66 |
| Solyc04g072780.2.1 | Tomato | nucleus | 30.87 | 27.38 |
| KRG97604 | Soybean | nucleus | 34.23 | 25.0 |
Protein Annotations
| EnsemblPlants:Solyc05g051860.2.1 | EnsemblPlantsGene:Solyc05g051860.2 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | UniParc:UPI0002765912 | UniProt:K4C1L7 | MapMan:27.3.3 |
Description
No Description!
Coordinates
chr5:-:62268040..62269629
Molecular Weight (calculated)
17290.5 Da
IEP (calculated)
9.163
GRAVY (calculated)
-0.885
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGNMRRTIS TTRITVDVMN NGEGKPFDLD LGTNYGFYGH DHQHVSSKYH HRSSSYQGFH HQIEEKSHFL TTCGLCNHRL TPCRDIYMYR GDTAFCSMEC
101: REQQMKSDKR KEKLKLLVLK KKTENYQNYS ELPFANSENS GKTKTIVAA
101: REQQMKSDKR KEKLKLLVLK KKTENYQNYS ELPFANSENS GKTKTIVAA
001: MLLGNRPRPQ MQRTASITRI TIEVDGDQTA GQDSDVSMTV VDGGENYAQR FLSPVNHQRN ERKYGGRSSP SSFLVNCGFC KRGLAPGRDI YMYKGDAAFC
101: SIECREQQME HDEGKTRNRV VLSPSK
101: SIECREQQME HDEGKTRNRV VLSPSK
Arabidopsis Description
Protein of unknown function (DUF581) [Source:TAIR;Acc:AT4G39795]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.