CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX85250
CDX86386
CDY04058
CDY44405

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G65040.1	CDX85250	AT3G29160.1	21798944
AT5G65040.1	CDX86386	AT3G29160.1	21798944
AT5G65040.1	CDY04058	AT3G29160.1	21798944
AT5G65040.1	CDY44405	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33991	Canola	mitochondrion	71.56	67.83
CDY31291	Canola	cytosol	71.56	67.83
AT5G65040.1	Thale cress	mitochondrion	68.81	66.37
CDX79242	Canola	mitochondrion	9.17	55.56
VIT_00s0357g00010.t01	Wine grape	mitochondrion	32.11	43.21
CDY38242	Canola	mitochondrion, nucleus	46.79	32.48
CDY21344	Canola	nucleus	46.79	32.48
CDY00425	Canola	nucleus	45.87	31.65
CDY01294	Canola	nucleus	44.95	31.01
PGSC0003DMT400056164	Potato	nucleus	38.53	28.97
Solyc05g051860.2.1	Tomato	nucleus	37.61	27.52
KRH31273	Soybean	mitochondrion	46.79	27.13
CDY71221	Canola	cytosol, nucleus, plastid	23.85	27.08
CDX79243	Canola	cytosol, plastid	27.52	26.79
PGSC0003DMT400017167	Potato	mitochondrion	38.53	26.75
CDX88407	Canola	cytosol, mitochondrion	37.61	26.62
CDX87485	Canola	cytosol, mitochondrion	37.61	26.62
CDY26845	Canola	mitochondrion	39.45	26.38
CDX68033	Canola	cytosol, mitochondrion	36.7	26.32
Solyc04g054760.2.1	Tomato	mitochondrion, nucleus	37.61	26.28
CDX72671	Canola	cytosol	31.19	25.95
CDY14641	Canola	mitochondrion	38.53	25.77
VIT_00s1003g00010.t01	Wine grape	nucleus	44.04	25.4
KRG97604	Soybean	nucleus	45.87	24.51

Protein Annotations

EnsemblPlants:CDY08827	EnsemblPlantsGene:GSBRNA2T00000791001	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF4
PFAM:PF04570	PFscan:PS51795	ProteinID:CDY08827	ProteinID:CDY08827.1	UniParc:UPI0004EF39E2	UniProt:A0A078F6X4
MapMan:27.3.3	:	:	:	:	:

Description

BnaA06g23970DBnaA06g23970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F6X4]

Coordinates

chrLK031989:+:763798..764257

Molecular Weight (calculated)

12500.1 Da

IEP (calculated)

9.969

GRAVY (calculated)

-0.647

Length

109 amino acids

Sequence
(BLAST)

001: MVLGKRRGSL IKRTTSMRTI TDDTATYHIA SQPSDHLTIH NPTVMISTKN DNDFLRTCSL CNQNLCHRRD IYMYRGDNAF CSLECRGKQI KLDERKVNNG
101: LASNKPIRI

Best Arabidopsis Sequence Match ( AT5G65040.1 )
(BLAST)

001: MVLGKRHGSL IKRTTSMKMI TLDTPTIYDA SQPSDHLTFH QHPHNPMVVM ASNYDDFLKT CSLCNRSLCH HRDIYMYRGN NAFCSLECRE KQIKLDEKKA
101: KTGFVTSKKP IRI

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9LV75]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.