Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g067030.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65040.1 | Solyc02g067030.2.1 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400017167 | Potato | mitochondrion | 90.38 | 89.81 |
| VIT_00s0357g00010.t01 | Wine grape | mitochondrion | 26.92 | 51.85 |
| Solyc05g051860.2.1 | Tomato | nucleus | 36.54 | 38.26 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 33.33 | 37.68 |
| CDY08827 | Canola | mitochondrion | 26.28 | 37.61 |
| CDY31291 | Canola | cytosol | 27.56 | 37.39 |
| CDY33991 | Canola | mitochondrion | 27.56 | 37.39 |
| VIT_00s1003g00010.t01 | Wine grape | nucleus | 44.87 | 37.04 |
| Bra031889.1-P | Field mustard | cytosol | 23.08 | 36.36 |
| AT5G65040.1 | Thale cress | mitochondrion | 26.28 | 36.28 |
| Solyc04g072780.2.1 | Tomato | nucleus | 37.18 | 34.52 |
| KRH31273 | Soybean | mitochondrion | 35.26 | 29.26 |
| KRG97604 | Soybean | nucleus | 35.9 | 27.45 |
Protein Annotations
| EnsemblPlants:Solyc04g054760.2.1 | EnsemblPlantsGene:Solyc04g054760.2 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 |
| PFAM:PF04570 | PFscan:PS51795 | UniParc:UPI0002765847 | UniProt:K4BSM4 | MapMan:27.3.3 | : |
Description
No Description!
Coordinates
chr4:-:53202343..53203538
Molecular Weight (calculated)
17550.7 Da
IEP (calculated)
9.017
GRAVY (calculated)
-0.920
Length
156 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGKRGRPPM RRTTSMTGIT VDVGTGTESE PSDCNKPKIT VDEIKSSSVI MGGYSSVPAM VSPRYQRRIS GEGFERERAN FLRICGRCNR RLINGRDIYM
101: YRGDAAFCSI ECREEQMKQD ERNDKSKIKP ENHHNHSEFH SAKSDTSSNN DTIAAA
101: YRGDAAFCSI ECREEQMKQD ERNDKSKIKP ENHHNHSEFH SAKSDTSSNN DTIAAA
001: MLLGKRQRPP IKRTTSLSEI KFDLNQPSEQ EPSDHQIQLV NVDEHRQVHQ RLLDQRLLAM VSPRGTQRRH SSDYSEDFLR SCSLCKRLLV HGRDIYMYRG
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VY80]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.