Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra025379.1-P | |
| Bra033088.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65040.1 | Bra025379.1-P | AT3G29160.1 | 21798944 |
| AT5G65040.1 | Bra033088.1-P | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31291 | Canola | cytosol | 98.99 | 85.22 |
| CDY33991 | Canola | mitochondrion | 98.99 | 85.22 |
| AT5G65040.1 | Thale cress | mitochondrion | 74.75 | 65.49 |
| VIT_00s0357g00010.t01 | Wine grape | mitochondrion | 37.37 | 45.68 |
| PGSC0003DMT400056164 | Potato | nucleus | 38.38 | 26.21 |
| Bra031369.1-P | Field mustard | nucleus | 41.41 | 26.11 |
| Bra012309.1-P | Field mustard | nucleus | 40.4 | 25.32 |
| Solyc05g051860.2.1 | Tomato | nucleus | 37.37 | 24.83 |
| Bra011831.1-P | Field mustard | cytosol | 28.28 | 24.35 |
| PGSC0003DMT400017167 | Potato | mitochondrion | 37.37 | 23.57 |
| Solyc04g054760.2.1 | Tomato | mitochondrion, nucleus | 36.36 | 23.08 |
| Bra015639.1-P | Field mustard | cytosol, mitochondrion, plastid | 35.35 | 22.73 |
| KRH31273 | Soybean | mitochondrion | 41.41 | 21.81 |
| VIT_00s1003g00010.t01 | Wine grape | nucleus | 41.41 | 21.69 |
| Bra008341.1-P | Field mustard | mitochondrion | 34.34 | 20.86 |
| KRG97604 | Soybean | nucleus | 42.42 | 20.59 |
| Bra003661.1-P | Field mustard | cytosol, mitochondrion | 31.31 | 20.39 |
Protein Annotations
| EnsemblPlants:Bra031889.1 | EnsemblPlants:Bra031889.1-P | EnsemblPlantsGene:Bra031889 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF4 | PFAM:PF04570 | PFscan:PS51795 | UniParc:UPI00025468F3 | UniProt:M4ESV9 | MapMan:27.3.3 |
Description
AT5G65040 (E=2e-037) | senescence-associated protein-related
Coordinates
chrA02:-:27258247..27258674
Molecular Weight (calculated)
11696.1 Da
IEP (calculated)
8.237
GRAVY (calculated)
-0.718
Length
99 amino acids
Sequence
(BLAST)
(BLAST)
1: MLMITDDIAT IYDHASQPSD HLTMHQHHHN PTVMMATNND DDFLRTCSLC NRNLCHRRDI YMYRGDNAFC SLECREKQIK LDERKVKNGV RAFKKTVRI
001: MVLGKRHGSL IKRTTSMKMI TLDTPTIYDA SQPSDHLTFH QHPHNPMVVM ASNYDDFLKT CSLCNRSLCH HRDIYMYRGN NAFCSLECRE KQIKLDEKKA
101: KTGFVTSKKP IRI
101: KTGFVTSKKP IRI
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9LV75]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.