Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400063153 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65040.1 | PGSC0003DMT400063153 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g051860.2.1 | Tomato | nucleus | 92.41 | 89.93 |
| VIT_00s0357g00010.t01 | Wine grape | mitochondrion | 31.72 | 56.79 |
| CDY08827 | Canola | mitochondrion | 28.97 | 38.53 |
| Bra031889.1-P | Field mustard | cytosol | 26.21 | 38.38 |
| CDY31291 | Canola | cytosol | 29.66 | 37.39 |
| PGSC0003DMT400017167 | Potato | mitochondrion | 40.0 | 36.94 |
| CDY33991 | Canola | mitochondrion | 28.28 | 35.65 |
| AT5G65040.1 | Thale cress | mitochondrion | 27.59 | 35.4 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 33.1 | 34.78 |
| VIT_00s1003g00010.t01 | Wine grape | nucleus | 39.31 | 30.16 |
| PGSC0003DMT400024491 | Potato | nucleus | 33.79 | 29.7 |
| KRH31273 | Soybean | mitochondrion | 34.48 | 26.6 |
| KRG97604 | Soybean | nucleus | 34.48 | 24.51 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400056164 | EnsemblPlantsGene:PGSC0003DMG400021821 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 |
| PFAM:PF04570 | PFscan:PS51795 | PGSC:PGSC0003DMG400021821 | SEG:seg | UniParc:UPI000294E733 | UniProt:M1BZ28 |
| MapMan:27.3.3 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021821]
Coordinates
chr5:-:47100364..47101923
Molecular Weight (calculated)
16708.7 Da
IEP (calculated)
9.587
GRAVY (calculated)
-0.986
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRTTSTTRI TVDVMINGEG KPSDLDLGTN NGLYGHDHRH VSSKYHHRSS SYQGFHHHIE EKAHFLTTCG LCNHRLTPSR DIYMYRGDTA FCSMECREQQ
101: MKSDKRKEKL KLLVLKKKNE NYQNYSELPF ANSENSGKTK TIAAA
101: MKSDKRKEKL KLLVLKKKNE NYQNYSELPF ANSENSGKTK TIAAA
001: MLLGNRPRPQ MQRTASITRI TIEVDGDQTA GQDSDVSMTV VDGGENYAQR FLSPVNHQRN ERKYGGRSSP SSFLVNCGFC KRGLAPGRDI YMYKGDAAFC
101: SIECREQQME HDEGKTRNRV VLSPSK
101: SIECREQQME HDEGKTRNRV VLSPSK
Arabidopsis Description
Protein of unknown function (DUF581) [Source:TAIR;Acc:AT4G39795]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.