Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_14s0108g01230.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G65040.1 | VIT_14s0108g01230.t01 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s0357g00010.t01 | Wine grape | mitochondrion | 32.8 | 76.54 |
| PGSC0003DMT400017167 | Potato | mitochondrion | 38.1 | 45.86 |
| Solyc04g054760.2.1 | Tomato | mitochondrion, nucleus | 37.04 | 44.87 |
| CDY31291 | Canola | cytosol | 26.98 | 44.35 |
| CDY33991 | Canola | mitochondrion | 26.98 | 44.35 |
| CDY08827 | Canola | mitochondrion | 25.4 | 44.04 |
| AT5G65040.1 | Thale cress | mitochondrion | 25.93 | 43.36 |
| Bra031889.1-P | Field mustard | cytosol | 21.69 | 41.41 |
| PGSC0003DMT400056164 | Potato | nucleus | 30.16 | 39.31 |
| Solyc05g051860.2.1 | Tomato | nucleus | 29.63 | 37.58 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 36.51 | 33.17 |
| KRH31273 | Soybean | mitochondrion | 32.28 | 32.45 |
| KRG97604 | Soybean | nucleus | 32.8 | 30.39 |
Protein Annotations
| ArrayExpress:VIT_00s1003g00010 | EMBL:FN596824 | EnsemblPlants:VIT_00s1003g00010.t01 | EnsemblPlantsGene:VIT_00s1003g00010 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom |
| PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 | PFAM:PF04570 | PFscan:PS51795 | ProteinID:CBI41084 | ProteinID:CBI41084.3 |
| UniParc:UPI0001BE520A | UniProt:D7UEC0 | MapMan:27.3.3 | : | : | : |
Description
No Description!
Coordinates
chrUn:-:37507231..37508727
Molecular Weight (calculated)
21474.7 Da
IEP (calculated)
9.767
GRAVY (calculated)
-0.666
Length
189 amino acids
Sequence
(BLAST)
(BLAST)
001: NCRVETKKMM LGKRARPQIK RTTSMTGITV DLGHNMVAGS NGYDPRFLAA TVSPRIHRRS SGEFMETAHF LRTCGLCQRR LQPGRDIYMY RGDTAFCSLE
101: CREQQMKQDE RKEKYSGMAS KKEDHRHHAS AQTAAASEGE TLAAYDRMIR DHFYDFTCLS STGYRKEISI RSACRVYASV ANPLTSTIL
101: CREQQMKQDE RKEKYSGMAS KKEDHRHHAS AQTAAASEGE TLAAYDRMIR DHFYDFTCLS STGYRKEISI RSACRVYASV ANPLTSTIL
001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
Arabidopsis Description
F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.