Factsheet for VIT_18s0001g05020.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0108g01230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22160.1	VIT_14s0108g01230.t01	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79242	Canola	mitochondrion	6.25	72.22
VIT_00s0357g00010.t01	Wine grape	mitochondrion	24.52	62.96
GSMUA_Achr3P04440_001	Banana	mitochondrion	36.06	57.25
KRH18875	Soybean	mitochondrion	38.94	56.64
Solyc12g056950.1.1	Tomato	cytosol, mitochondrion	36.06	54.35
KRH16681	Soybean	mitochondrion	39.42	54.3
PGSC0003DMT400022055	Potato	mitochondrion	35.1	52.9
KRH62389	Soybean	mitochondrion	33.65	51.47
GSMUA_Achr9P13000_001	Banana	mitochondrion, nucleus	34.62	49.32
CDX79243	Canola	cytosol, plastid	25.96	48.21
GSMUA_Achr7P17710_001	Banana	mitochondrion	35.1	48.03
KRH53114	Soybean	nucleus	35.1	47.4
GSMUA_Achr6P02010_001	Banana	mitochondrion, nucleus	35.1	47.1
GSMUA_Achr10P...	Banana	nucleus	33.17	46.94
AT1G78020.1	Thale cress	mitochondrion	36.54	46.91
Bra015639.1-P	Field mustard	cytosol, mitochondrion, plastid	34.62	46.75
CDX87485	Canola	cytosol, mitochondrion	34.62	46.75
CDY26845	Canola	mitochondrion	36.54	46.63
Bra008341.1-P	Field mustard	mitochondrion	36.54	46.63
CDX68033	Canola	cytosol, mitochondrion	33.65	46.05
GSMUA_Achr4P01820_001	Banana	mitochondrion	35.58	45.96
AT1G22160.1	Thale cress	mitochondrion, nucleus	32.21	45.58
CDX88407	Canola	cytosol, mitochondrion	33.65	45.45
CDY14641	Canola	mitochondrion	35.58	45.4
Bra003661.1-P	Field mustard	cytosol, mitochondrion	33.17	45.39
CDY21344	Canola	nucleus	33.65	44.59
Bra031369.1-P	Field mustard	nucleus	33.65	44.59
CDY38242	Canola	mitochondrion, nucleus	32.69	43.31
Bra012309.1-P	Field mustard	nucleus	32.21	42.41
CDY01294	Canola	nucleus	32.21	42.41
CDY00425	Canola	nucleus	31.73	41.77
GSMUA_Achr5P24390_001	Banana	cytosol	25.0	41.27
TraesCS7A01G182100.1	Wheat	mitochondrion	26.44	39.86
TraesCS7B01G086900.1	Wheat	mitochondrion, nucleus	25.96	38.57
GSMUA_Achr6P04060_001	Banana	mitochondrion, nucleus	27.88	37.42
TraesCS7D01G183500.1	Wheat	mitochondrion	25.48	37.32
Zm00001d052234_P001	Maize	plastid	27.88	36.94
Os06t0223700-01	Rice	cytosol, mitochondrion, nucleus, plastid	25.0	36.62
Zm00001d032292_P001	Maize	mitochondrion	33.17	36.51
VIT_00s1003g00010.t01	Wine grape	nucleus	33.17	36.51
GSMUA_Achr8P18580_001	Banana	cytosol, mitochondrion, nucleus, plastid	27.88	36.48
Zm00001d020264_P001	Maize	nucleus	31.73	36.46
Zm00001d005657_P002	Maize	nucleus	30.77	36.16
KXG30742	Sorghum	plastid	26.92	34.57
OQU76080	Sorghum	cytosol	22.12	34.33
Os02t0751300-01	Rice	mitochondrion	24.04	34.01
TraesCS5D01G200000.1	Wheat	cytosol	26.92	33.73
Zm00001d018076_P001	Maize	plastid	25.96	33.54
Os09t0367900-02	Rice	cytosol	28.37	33.52
TraesCS5A01G191000.1	Wheat	cytosol	26.44	33.13
Zm00001d050285_P001	Maize	mitochondrion	28.85	32.43
EER96652	Sorghum	nucleus	30.29	31.98
TraesCS6B01G331900.1	Wheat	mitochondrion	23.56	31.82
Zm00001d044849_P001	Maize	plastid	23.56	31.21
EES14968	Sorghum	mitochondrion	29.81	31.16
Os08t0407600-01	Rice	mitochondrion	29.81	31.16
TraesCS6A01G302700.1	Wheat	mitochondrion	22.6	29.38
TraesCS6D01G282200.1	Wheat	mitochondrion	21.63	29.22
HORVU6Hr1G073620.1	Barley	mitochondrion	17.79	27.41
TraesCS6A01G295900.1	Wheat	mitochondrion	17.31	25.53
TraesCS6D01G276200.1	Wheat	mitochondrion	17.79	25.0
TraesCS6A01G295600.1	Wheat	mitochondrion	17.31	24.32
TraesCS6A01G295800.1	Wheat	mitochondrion	16.35	24.11
TraesCS6B01G325800.1	Wheat	nucleus, plastid	18.27	23.46
TraesCS6D01G276300.1	Wheat	mitochondrion	15.87	23.4
TraesCS6B01G325700.1	Wheat	mitochondrion	16.83	23.18
HORVU6Hr1G075130.1	Barley	mitochondrion	15.87	20.37

Protein Annotations

EntrezGene:100252409	wikigene:100252409	MapMan:27.3.3	ProteinID:CCB45551	ProteinID:CCB45551.1	UniProt:F6H0V4
EMBL:FN595227	InterPro:IPR007650	EntrezGene:LOC100252409	wikigene:LOC100252409	PFAM:PF04570	PFscan:PS51795
PANTHER:PTHR33059	PANTHER:PTHR33059:SF74	SignalP:SignalP-noTM	UniParc:UPI000210AC8A	ArrayExpress:VIT_18s0001g05020	EnsemblPlantsGene:VIT_18s0001g05020
EnsemblPlants:VIT_18s0001g05020.t01	unigene:Vvi.2122	RefSeq:XP_002285807	RefSeq:XP_002285807.2	InterPro:Zf-FLZ_dom	SEG:seg

Description

No Description!

Coordinates

chr18:-:4122072..4123281

Molecular Weight (calculated)

23259.7 Da

IEP (calculated)

9.075

GRAVY (calculated)

-0.592

Length

208 amino acids

Sequence
(BLAST)

001: MNGPDWLLAF WPCVYLPLST PSPLLLSHSV LSLDFEVVKR RGVRGAAAEE KMLLGKRPRP PMKRTTSMTE FTLDPNSVQQ PPSDSQNPFK DRPKSVGFGG
101: DPYRQPSGVD GYGFDHRFLS AVSPRNPRRY SADFVDNSHF LRACCLCKRR LVSGRDIYMY RGDSAFCSLE CRQQQMNQDE RKEKCSLASK KEATASTAGS
201: EGETVAAI

Best Arabidopsis Sequence Match ( AT1G78020.1 )
(BLAST)

001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV

Arabidopsis Description

F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.