Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 2
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005108_P003 | |
| Zm00001d010811_P002 | |
| Zm00001d038745_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22160.1 | Zm00001d005108_P003 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | Zm00001d010811_P002 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | Zm00001d038745_P002 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018076_P001 | Maize | plastid | 73.89 | 72.05 |
| KXG30742 | Sorghum | plastid | 70.06 | 67.9 |
| Os02t0751300-01 | Rice | mitochondrion | 44.59 | 47.62 |
| GSMUA_Achr3P04440_001 | Banana | mitochondrion | 39.49 | 47.33 |
| CDX79242 | Canola | mitochondrion | 5.1 | 44.44 |
| TraesCS6B01G331900.1 | Wheat | mitochondrion | 42.04 | 42.86 |
| GSMUA_Achr9P13000_001 | Banana | mitochondrion, nucleus | 39.49 | 42.47 |
| TraesCS6D01G282200.1 | Wheat | mitochondrion | 40.76 | 41.56 |
| GSMUA_Achr6P02010_001 | Banana | mitochondrion, nucleus | 40.13 | 40.65 |
| TraesCS6A01G302700.1 | Wheat | mitochondrion | 40.76 | 40.0 |
| GSMUA_Achr10P... | Banana | nucleus | 36.94 | 39.46 |
| Zm00001d044849_P001 | Maize | plastid | 38.22 | 38.22 |
| GSMUA_Achr7P17710_001 | Banana | mitochondrion | 35.67 | 36.84 |
| KRH18875 | Soybean | mitochondrion | 33.12 | 36.36 |
| HORVU6Hr1G073620.1 | Barley | mitochondrion | 29.3 | 34.07 |
| Zm00001d020264_P001 | Maize | nucleus | 38.85 | 33.7 |
| KRH16681 | Soybean | mitochondrion | 31.85 | 33.11 |
| GSMUA_Achr4P01820_001 | Banana | mitochondrion | 33.76 | 32.92 |
| GSMUA_Achr8P18580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 33.12 | 32.7 |
| KRH62389 | Soybean | mitochondrion | 28.03 | 32.35 |
| Zm00001d005657_P002 | Maize | nucleus | 36.31 | 32.2 |
| TraesCS6A01G295900.1 | Wheat | mitochondrion | 28.66 | 31.91 |
| TraesCS6A01G295800.1 | Wheat | mitochondrion | 28.03 | 31.21 |
| GSMUA_Achr6P04060_001 | Banana | mitochondrion, nucleus | 30.57 | 30.97 |
| TraesCS6B01G325800.1 | Wheat | nucleus, plastid | 31.85 | 30.86 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 26.75 | 30.43 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 26.75 | 30.43 |
| TraesCS6A01G295600.1 | Wheat | mitochondrion | 28.66 | 30.41 |
| TraesCS6D01G276300.1 | Wheat | mitochondrion | 26.75 | 29.79 |
| TraesCS6D01G276200.1 | Wheat | mitochondrion | 28.03 | 29.73 |
| Zm00001d032292_P001 | Maize | mitochondrion | 35.67 | 29.63 |
| GSMUA_Achr5P24390_001 | Banana | cytosol | 23.57 | 29.37 |
| KRH53114 | Soybean | nucleus | 28.66 | 29.22 |
| Solyc04g072780.2.1 | Tomato | nucleus | 30.57 | 28.57 |
| CDX79243 | Canola | cytosol, plastid | 20.38 | 28.57 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 36.94 | 27.88 |
| Zm00001d050285_P001 | Maize | mitochondrion | 32.48 | 27.57 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 25.48 | 27.21 |
| Bra008341.1-P | Field mustard | mitochondrion | 28.03 | 26.99 |
| CDY26845 | Canola | mitochondrion | 28.03 | 26.99 |
| Bra031369.1-P | Field mustard | nucleus | 26.75 | 26.75 |
| CDY21344 | Canola | nucleus | 26.75 | 26.75 |
| PGSC0003DMT400024491 | Potato | nucleus | 28.03 | 26.67 |
| Bra015639.1-P | Field mustard | cytosol, mitochondrion, plastid | 26.11 | 26.62 |
| CDX87485 | Canola | cytosol, mitochondrion | 26.11 | 26.62 |
| CDX88407 | Canola | cytosol, mitochondrion | 26.11 | 26.62 |
| CDY14641 | Canola | mitochondrion | 27.39 | 26.38 |
| Bra012309.1-P | Field mustard | nucleus | 26.11 | 25.95 |
| AT1G78020.1 | Thale cress | mitochondrion | 26.75 | 25.93 |
| TraesCS6B01G325700.1 | Wheat | mitochondrion | 24.84 | 25.83 |
| CDY38242 | Canola | mitochondrion, nucleus | 25.48 | 25.48 |
| CDY01294 | Canola | nucleus | 24.84 | 24.68 |
| CDX68033 | Canola | cytosol, mitochondrion | 23.57 | 24.34 |
| Bra003661.1-P | Field mustard | cytosol, mitochondrion | 23.57 | 24.34 |
| CDY00425 | Canola | nucleus | 24.2 | 24.05 |
| HORVU6Hr1G075130.1 | Barley | mitochondrion | 22.29 | 21.6 |
Protein Annotations
| EMBL:BT040190 | EnsemblPlants:Zm00001d052234_P001 | EnsemblPlants:Zm00001d052234_T001 | EnsemblPlantsGene:Zm00001d052234 | EntrezGene:100274617 | InterPro:IPR007650 |
| InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 | PFAM:PF04570 | PFscan:PS51795 | ProteinID:AQK56517.1 |
| SEG:seg | UniParc:UPI00017B7BA8 | UniProt:B4FSV2 | MapMan:27.3.3 | : | : |
Description
No Description!
Coordinates
chr4:-:184184459..184186027
Molecular Weight (calculated)
16441.4 Da
IEP (calculated)
8.676
GRAVY (calculated)
-0.419
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPAERIESG TALGKRPRSR ALPRTPSMVT VPSAAKQGRQ ERRAASLPAA GTGTGAAGAM PVGYCYYYGG SFAAVETAAF LKACGRCSRR LGPGHDTFIY
101: RGEVAFCSQE CREKRIEYDE RMEKTCCSLT SIKEAPSVSG ASGSDQSGSG GETVAAA
101: RGEVAFCSQE CREKRIEYDE RMEKTCCSLT SIKEAPSVSG ASGSDQSGSG GETVAAA
001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
Arabidopsis Description
F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.