Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 2
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G295800.1 | Wheat | mitochondrion | 73.46 | 84.4 |
| TraesCS6A01G295900.1 | Wheat | mitochondrion | 72.84 | 83.69 |
| TraesCS6D01G276300.1 | Wheat | mitochondrion | 69.75 | 80.14 |
| HORVU6Hr1G073620.1 | Barley | mitochondrion | 46.91 | 56.3 |
| TraesCS6B01G325700.1 | Wheat | mitochondrion | 50.62 | 54.3 |
| TraesCS6B01G331900.1 | Wheat | mitochondrion | 41.36 | 43.51 |
| Os02t0751300-01 | Rice | mitochondrion | 32.1 | 35.37 |
| CDX79242 | Canola | mitochondrion | 3.7 | 33.33 |
| KXG30742 | Sorghum | plastid | 32.72 | 32.72 |
| Zm00001d052234_P001 | Maize | plastid | 30.86 | 31.85 |
| GSMUA_Achr10P... | Banana | nucleus | 28.4 | 31.29 |
| Zm00001d018076_P001 | Maize | plastid | 28.4 | 28.57 |
| KRH18875 | Soybean | mitochondrion | 24.69 | 27.97 |
| GSMUA_Achr7P17710_001 | Banana | mitochondrion | 25.93 | 27.63 |
| GSMUA_Achr3P04440_001 | Banana | mitochondrion | 22.22 | 27.48 |
| GSMUA_Achr9P13000_001 | Banana | mitochondrion, nucleus | 24.07 | 26.71 |
| KRH16681 | Soybean | mitochondrion | 24.69 | 26.49 |
| TraesCS7B01G086900.1 | Wheat | mitochondrion, nucleus | 22.84 | 26.43 |
| GSMUA_Achr5P24390_001 | Banana | cytosol | 20.37 | 26.19 |
| GSMUA_Achr6P04060_001 | Banana | mitochondrion, nucleus | 23.46 | 24.52 |
| GSMUA_Achr4P01820_001 | Banana | mitochondrion | 23.46 | 23.6 |
| KRH62389 | Soybean | mitochondrion | 19.75 | 23.53 |
| GSMUA_Achr6P02010_001 | Banana | mitochondrion, nucleus | 22.22 | 23.23 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 19.14 | 22.46 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 19.14 | 22.46 |
| CDX79243 | Canola | cytosol, plastid | 15.43 | 22.32 |
| KRH53114 | Soybean | nucleus | 20.99 | 22.08 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 19.14 | 21.09 |
| Bra012309.1-P | Field mustard | nucleus | 20.37 | 20.89 |
| GSMUA_Achr8P18580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 20.37 | 20.75 |
| CDY01294 | Canola | nucleus | 19.75 | 20.25 |
| Solyc04g072780.2.1 | Tomato | nucleus | 20.37 | 19.64 |
| CDY00425 | Canola | nucleus | 19.14 | 19.62 |
| PGSC0003DMT400024491 | Potato | nucleus | 19.75 | 19.39 |
| Bra031369.1-P | Field mustard | nucleus | 18.52 | 19.11 |
| CDY21344 | Canola | nucleus | 18.52 | 19.11 |
| CDY38242 | Canola | mitochondrion, nucleus | 18.52 | 19.11 |
| CDY14641 | Canola | mitochondrion | 19.14 | 19.02 |
| Bra015639.1-P | Field mustard | cytosol, mitochondrion, plastid | 17.9 | 18.83 |
| CDX87485 | Canola | cytosol, mitochondrion | 17.9 | 18.83 |
| CDX88407 | Canola | cytosol, mitochondrion | 17.9 | 18.83 |
| CDY26845 | Canola | mitochondrion | 18.52 | 18.4 |
| Bra008341.1-P | Field mustard | mitochondrion | 18.52 | 18.4 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 23.46 | 18.27 |
| AT1G78020.1 | Thale cress | mitochondrion | 17.9 | 17.9 |
| CDX68033 | Canola | cytosol, mitochondrion | 16.67 | 17.76 |
| Bra003661.1-P | Field mustard | cytosol, mitochondrion | 16.67 | 17.76 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G325800.1 | EnsemblPlantsGene:TraesCS6B01G325800 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | MapMan:27.3.3 | : | : |
Description
No Description!
Coordinates
chr6B:+:575321220..575322756
Molecular Weight (calculated)
17292.9 Da
IEP (calculated)
10.962
GRAVY (calculated)
-0.458
Length
162 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRCGAGTSE RASSARTQSD EMLKKRPRSI VLRRKVSGAS MPSAARRVRQ VSGDDKAARA RPIFFVSANT VKMGAGGGAT PYLKRDTFAG LWMAAAFLAA
101: CGICRKPLAG EDAYIDRGEF AFCSDECRKL YIKWKRACSL KSRKKAPSKK SGSSGGSCGG PG
101: CGICRKPLAG EDAYIDRGEF AFCSDECRKL YIKWKRACSL KSRKKAPSKK SGSSGGSCGG PG
001: MLTKRTHPMI GKISELLVGV NRSTAAPFFD VLMTSPKSPL DFKILPQISQ RNSSKRFYDD NLGGSVGLGI VAALENSNTR RITSVCRSEP NQPGRSDPVQ
101: FMSHGGSTDG EDEEMFIMDE EDYTLVTCHH GPSGSCNTRV YDKDGFECFS SKINDDRRER LFVVDVVTES PENSPEFQGL GFLNSCYLCR KKLHGQDIFI
201: YRGEKAFCST ECRSSHIAND ERKERCRSKF STSPYTAGQI FSTGVLVT
101: FMSHGGSTDG EDEEMFIMDE EDYTLVTCHH GPSGSCNTRV YDKDGFECFS SKINDDRRER LFVVDVVTES PENSPEFQGL GFLNSCYLCR KKLHGQDIFI
201: YRGEKAFCST ECRSSHIAND ERKERCRSKF STSPYTAGQI FSTGVLVT
Arabidopsis Description
At5g20700 [Source:UniProtKB/TrEMBL;Acc:Q8GYX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.