Subcellular Localization
min:
: max
Winner_takes_all: nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G183500.1 | Wheat | mitochondrion | 90.0 | 88.73 |
| TraesCS7A01G182100.1 | Wheat | mitochondrion | 85.71 | 86.96 |
| Os06t0223700-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 62.86 | 61.97 |
| OQU76080 | Sorghum | cytosol | 59.29 | 61.94 |
| CDX79242 | Canola | mitochondrion | 7.14 | 55.56 |
| Zm00001d044849_P001 | Maize | plastid | 57.86 | 51.59 |
| GSMUA_Achr3P04440_001 | Banana | mitochondrion | 42.14 | 45.04 |
| GSMUA_Achr10P... | Banana | nucleus | 47.14 | 44.9 |
| GSMUA_Achr9P13000_001 | Banana | mitochondrion, nucleus | 45.0 | 43.15 |
| GSMUA_Achr6P02010_001 | Banana | mitochondrion, nucleus | 46.43 | 41.94 |
| GSMUA_Achr7P17710_001 | Banana | mitochondrion | 45.0 | 41.45 |
| KRH18875 | Soybean | mitochondrion | 41.43 | 40.56 |
| KRH16681 | Soybean | mitochondrion | 42.14 | 39.07 |
| KRH62389 | Soybean | mitochondrion | 36.43 | 37.5 |
| CDX79243 | Canola | cytosol, plastid | 29.29 | 36.61 |
| GSMUA_Achr5P24390_001 | Banana | cytosol | 32.86 | 36.51 |
| GSMUA_Achr8P18580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 41.43 | 36.48 |
| PGSC0003DMT400024491 | Potato | nucleus | 42.86 | 36.36 |
| GSMUA_Achr4P01820_001 | Banana | mitochondrion | 41.43 | 36.02 |
| Solyc04g072780.2.1 | Tomato | nucleus | 42.86 | 35.71 |
| TraesCS6B01G331900.1 | Wheat | mitochondrion | 38.57 | 35.06 |
| CDY21344 | Canola | nucleus | 38.57 | 34.39 |
| Bra031369.1-P | Field mustard | nucleus | 38.57 | 34.39 |
| Bra012309.1-P | Field mustard | nucleus | 38.57 | 34.18 |
| CDY01294 | Canola | nucleus | 37.86 | 33.54 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 34.29 | 32.65 |
| CDY38242 | Canola | mitochondrion, nucleus | 36.43 | 32.48 |
| CDY00425 | Canola | nucleus | 36.43 | 32.28 |
| GSMUA_Achr6P04060_001 | Banana | mitochondrion, nucleus | 35.71 | 32.26 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 31.43 | 31.88 |
| CDX88407 | Canola | cytosol, mitochondrion | 35.0 | 31.82 |
| KRH53114 | Soybean | nucleus | 35.0 | 31.82 |
| CDX87485 | Canola | cytosol, mitochondrion | 35.0 | 31.82 |
| CDX68033 | Canola | cytosol, mitochondrion | 34.29 | 31.58 |
| AT1G78020.1 | Thale cress | mitochondrion | 36.43 | 31.48 |
| CDY26845 | Canola | mitochondrion | 36.43 | 31.29 |
| CDY14641 | Canola | mitochondrion | 36.43 | 31.29 |
| Bra008341.1-P | Field mustard | mitochondrion | 36.43 | 31.29 |
| Bra015639.1-P | Field mustard | cytosol, mitochondrion, plastid | 34.29 | 31.17 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 30.71 | 31.16 |
| Bra003661.1-P | Field mustard | cytosol, mitochondrion | 33.57 | 30.92 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 38.57 | 25.96 |
| TraesCS6B01G325800.1 | Wheat | nucleus, plastid | 26.43 | 22.84 |
| TraesCS6B01G325700.1 | Wheat | mitochondrion | 22.14 | 20.53 |
Protein Annotations
| EnsemblPlants:TraesCS7B01G086900.1 | EnsemblPlantsGene:TraesCS7B01G086900 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF4 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | MapMan:27.3.3 | : | : |
Description
No Description!
Coordinates
chr7B:-:100332081..100333171
Molecular Weight (calculated)
14827.5 Da
IEP (calculated)
8.880
GRAVY (calculated)
-0.448
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTLGKRHRN SSSMRRTTSM SAFAVPPEEE AGRQPTRAAR GASAAPAQTE WGAASAAFQR RHSGDFNAAV ETAAFLKACG LCCRRLGPGR DTFIYMGEVA
101: FCSLECRQQQ MNLDELKEKK CFPATGSGGS DGTSGTVAAA
101: FCSLECRQQQ MNLDELKEKK CFPATGSGGS DGTSGTVAAA
001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
Arabidopsis Description
F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.