CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH01228
KRH18445
KRH44934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22160.1	KRH01228	AT3G29160.1	21798944
AT1G22160.1	KRH18445	AT3G29160.1	21798944
AT1G22160.1	KRH44934	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16681	Soybean	mitochondrion	83.22	78.81
CDX79242	Canola	mitochondrion	9.79	77.78
KRH62389	Soybean	mitochondrion	47.55	50.0
AT1G22160.1	Thale cress	mitochondrion, nucleus	50.35	48.98
GSMUA_Achr3P04440_001	Banana	mitochondrion	44.06	48.09
Bra015639.1-P	Field mustard	cytosol, mitochondrion, plastid	50.35	46.75
CDX79243	Canola	cytosol, plastid	36.36	46.43
CDX87485	Canola	cytosol, mitochondrion	49.65	46.1
CDX88407	Canola	cytosol, mitochondrion	49.65	46.1
CDY21344	Canola	nucleus	50.35	45.86
Bra031369.1-P	Field mustard	nucleus	50.35	45.86
AT1G78020.1	Thale cress	mitochondrion	51.05	45.06
Bra008341.1-P	Field mustard	mitochondrion	51.05	44.79
CDY26845	Canola	mitochondrion	51.05	44.79
CDX68033	Canola	cytosol, mitochondrion	47.55	44.74
Solyc12g056950.1.1	Tomato	cytosol, mitochondrion	42.66	44.2
PGSC0003DMT400022055	Potato	mitochondrion	42.66	44.2
Bra003661.1-P	Field mustard	cytosol, mitochondrion	46.85	44.08
Bra012309.1-P	Field mustard	nucleus	48.25	43.67
CDY14641	Canola	mitochondrion	49.65	43.56
KRH53114	Soybean	nucleus	46.85	43.51
GSMUA_Achr6P02010_001	Banana	mitochondrion, nucleus	46.85	43.23
CDY01294	Canola	nucleus	47.55	43.04
CDY00425	Canola	nucleus	47.55	43.04
TraesCS7A01G182100.1	Wheat	mitochondrion	41.26	42.75
CDY38242	Canola	mitochondrion, nucleus	46.85	42.68
GSMUA_Achr9P13000_001	Banana	mitochondrion, nucleus	43.36	42.47
GSMUA_Achr7P17710_001	Banana	mitochondrion	44.76	42.11
GSMUA_Achr10P...	Banana	nucleus	42.66	41.5
TraesCS7B01G086900.1	Wheat	mitochondrion, nucleus	40.56	41.43
TraesCS7D01G183500.1	Wheat	mitochondrion	39.16	39.44
VIT_18s0001g05020.t01	Wine grape	extracellular, vacuole	56.64	38.94
GSMUA_Achr4P01820_001	Banana	mitochondrion	42.66	37.89
OQU76080	Sorghum	cytosol	34.97	37.31
GSMUA_Achr5P24390_001	Banana	cytosol	32.87	37.3
GSMUA_Achr6P04060_001	Banana	mitochondrion, nucleus	39.86	36.77
Os06t0223700-01	Rice	cytosol, mitochondrion, nucleus, plastid	36.36	36.62
Zm00001d018076_P001	Maize	plastid	38.46	34.16
GSMUA_Achr8P18580_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.06	33.33
Os02t0751300-01	Rice	mitochondrion	34.27	33.33
Zm00001d052234_P001	Maize	plastid	36.36	33.12
Zm00001d050285_P001	Maize	mitochondrion	42.66	32.97
Zm00001d032292_P001	Maize	mitochondrion	43.36	32.8
Zm00001d044849_P001	Maize	plastid	35.66	32.48
KRH31273	Soybean	mitochondrion	41.96	31.91
TraesCS5A01G191000.1	Wheat	cytosol	36.36	31.33
TraesCS5D01G200000.1	Wheat	cytosol	36.36	31.33
Zm00001d005657_P002	Maize	nucleus	38.46	31.07
Zm00001d020264_P001	Maize	nucleus	39.16	30.94
TraesCS6B01G331900.1	Wheat	mitochondrion	32.87	30.52
EER96652	Sorghum	nucleus	41.96	30.46
KRG97604	Soybean	nucleus	43.36	30.39
KXG30742	Sorghum	plastid	34.27	30.25
Os08t0407600-01	Rice	mitochondrion	41.96	30.15
EES14968	Sorghum	mitochondrion	41.26	29.65
Os09t0367900-02	Rice	cytosol	36.36	29.55
TraesCS6A01G302700.1	Wheat	mitochondrion	32.17	28.75
TraesCS6D01G282200.1	Wheat	mitochondrion	30.07	27.92
HORVU6Hr1G073620.1	Barley	mitochondrion	25.87	27.41
TraesCS6A01G295600.1	Wheat	mitochondrion	26.57	25.68
TraesCS6A01G295900.1	Wheat	mitochondrion	25.17	25.53
TraesCS6D01G276200.1	Wheat	mitochondrion	25.87	25.0
TraesCS6D01G276300.1	Wheat	mitochondrion	24.48	24.82
TraesCS6B01G325800.1	Wheat	nucleus, plastid	27.97	24.69
TraesCS6A01G295800.1	Wheat	mitochondrion	23.08	23.4
TraesCS6B01G325700.1	Wheat	mitochondrion	24.48	23.18
HORVU6Hr1G075130.1	Barley	mitochondrion	21.68	19.14

Protein Annotations

EMBL:ACUP02008140	EMBL:BT097731	EnsemblPlants:KRH18875	EnsemblPlantsGene:GLYMA_13G087300	EntrezGene:100796944	InterPro:IPR007650
InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF74	PFAM:PF04570	PFscan:PS51795	ProteinID:KRH18875
ProteinID:KRH18875.1	SEG:seg	UniParc:UPI0001B16F74	UniProt:C6TJ87	MapMan:27.3.3	:

Description

hypothetical protein

Coordinates

chr13:-:19973879..19975146

Molecular Weight (calculated)

15674.0 Da

IEP (calculated)

10.699

GRAVY (calculated)

-0.536

Length

143 amino acids

Sequence
(BLAST)

001: MLLGKRPRPP MKRTTSMSEM TLDLNTAADA AAAADQQRSG VGPSAAADQT TRMLASPKIL RRHSSYFGDA RHFLRACSLC KRPLVPGRDI YMYRGDSAFC
101: SLECRQQQIN QDERKEKFVM ASKKKVVAPP PSGSQVVATA TKG

Best Arabidopsis Sequence Match ( AT1G78020.1 )
(BLAST)

001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV

Arabidopsis Description

F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.