Factsheet for TraesCS6B01G325700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1
TraesCS1B01G364800.1
TraesCS1D01G353300.1
TraesCS3A01G282800.1
TraesCS3B01G316500.1
TraesCS3D01G282800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22160.1	TraesCS1A01G350500.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS1B01G364800.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS1D01G353300.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3A01G282800.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3B01G316500.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3D01G282800.1	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G295600.1	Wheat	mitochondrion	74.17	75.68
TraesCS6D01G276200.1	Wheat	mitochondrion	72.85	74.32
TraesCS6B01G325800.1	Wheat	nucleus, plastid	54.3	50.62
HORVU6Hr1G073620.1	Barley	mitochondrion	43.05	48.15
TraesCS6B01G331900.1	Wheat	mitochondrion	41.06	40.26
Os02t0751300-01	Rice	mitochondrion	27.15	27.89
CDX79242	Canola	mitochondrion	3.31	27.78
GSMUA_Achr10P...	Banana	nucleus	26.49	27.21
GSMUA_Achr3P04440_001	Banana	mitochondrion	22.52	25.95
GSMUA_Achr7P17710_001	Banana	mitochondrion	25.17	25.0
Zm00001d052234_P001	Maize	plastid	25.83	24.84
GSMUA_Achr5P24390_001	Banana	cytosol	20.53	24.6
KRH18875	Soybean	mitochondrion	23.18	24.48
Zm00001d018076_P001	Maize	plastid	25.83	24.22
KXG30742	Sorghum	plastid	25.83	24.07
Solyc12g056950.1.1	Tomato	cytosol, mitochondrion	21.85	23.91
GSMUA_Achr6P04060_001	Banana	mitochondrion, nucleus	24.5	23.87
KRH16681	Soybean	mitochondrion	23.84	23.84
GSMUA_Achr9P13000_001	Banana	mitochondrion, nucleus	22.52	23.29
GSMUA_Achr6P02010_001	Banana	mitochondrion, nucleus	23.84	23.23
GSMUA_Achr4P01820_001	Banana	mitochondrion	24.5	22.98
PGSC0003DMT400022055	Potato	mitochondrion	20.53	22.46
TraesCS7B01G086900.1	Wheat	mitochondrion, nucleus	20.53	22.14
Bra015639.1-P	Field mustard	cytosol, mitochondrion, plastid	21.85	21.43
CDX79243	Canola	cytosol, plastid	15.89	21.43
CDX88407	Canola	cytosol, mitochondrion	21.85	21.43
CDX87485	Canola	cytosol, mitochondrion	21.19	20.78
KRH62389	Soybean	mitochondrion	18.54	20.59
CDY26845	Canola	mitochondrion	21.85	20.25
Bra008341.1-P	Field mustard	mitochondrion	21.85	20.25
GSMUA_Achr8P18580_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.19	20.13
AT1G22160.1	Thale cress	mitochondrion, nucleus	19.21	19.73
CDY14641	Canola	mitochondrion	21.19	19.63
AT1G78020.1	Thale cress	mitochondrion	20.53	19.14
CDX68033	Canola	cytosol, mitochondrion	19.21	19.08
Bra003661.1-P	Field mustard	cytosol, mitochondrion	19.21	19.08
Solyc04g072780.2.1	Tomato	nucleus	21.19	19.05
KRH53114	Soybean	nucleus	19.21	18.83
PGSC0003DMT400024491	Potato	nucleus	20.53	18.79
CDY38242	Canola	mitochondrion, nucleus	18.54	17.83
CDY00425	Canola	nucleus	18.54	17.72
CDY01294	Canola	nucleus	18.54	17.72
Bra031369.1-P	Field mustard	nucleus	17.88	17.2
CDY21344	Canola	nucleus	17.88	17.2
Bra012309.1-P	Field mustard	nucleus	17.88	17.09
VIT_18s0001g05020.t01	Wine grape	extracellular, vacuole	23.18	16.83

Protein Annotations

EnsemblPlants:TraesCS6B01G325700.1	EnsemblPlantsGene:TraesCS6B01G325700	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF4
PFAM:PF04570	PFscan:PS51795	SEG:seg	MapMan:27.3.3	:	:

Description

No Description!

Coordinates

chr6B:+:575314769..575316262

Molecular Weight (calculated)

16631.0 Da

IEP (calculated)

10.001

GRAVY (calculated)

-0.465

Length

151 amino acids

Sequence
(BLAST)

001: MVNKRPRSMV MRRKVSVASM PSVQRRVRQV SGDDKQARER PIFFVSACDE EMGAGGGGHH SLKRDAFTGL WMTAAFLAAC GICAKPLADK DAYIYRSEFA
101: FCTKECREKY MEKDIMMEKS AASDPSGRPR RTSPAAAGAH AAGQANPFSL Y

Best Arabidopsis Sequence Match ( AT1G78020.1 )
(BLAST)

001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV

Arabidopsis Description

F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.