Factsheet for TraesCS6D01G276200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G350500.1
TraesCS1B01G364800.1
TraesCS1D01G353300.1
TraesCS3A01G282800.1
TraesCS3B01G316500.1
TraesCS3D01G282800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22160.1	TraesCS1A01G350500.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS1B01G364800.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS1D01G353300.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3A01G282800.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3B01G316500.1	AT3G29160.1	21798944
AT1G22160.1	TraesCS3D01G282800.1	AT3G29160.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G295600.1	Wheat	mitochondrion	90.54	90.54
TraesCS6B01G325700.1	Wheat	mitochondrion	74.32	72.85
TraesCS6D01G276300.1	Wheat	mitochondrion	63.51	66.67
HORVU6Hr1G073620.1	Barley	mitochondrion	51.35	56.3
TraesCS6D01G282200.1	Wheat	mitochondrion	43.24	41.56
CDX79242	Canola	mitochondrion	4.05	33.33
Os02t0751300-01	Rice	mitochondrion	33.11	33.33
KXG30742	Sorghum	plastid	31.08	28.4
GSMUA_Achr3P04440_001	Banana	mitochondrion	25.0	28.24
Zm00001d052234_P001	Maize	plastid	29.73	28.03
GSMUA_Achr10P...	Banana	nucleus	27.7	27.89
GSMUA_Achr5P24390_001	Banana	cytosol	23.65	27.78
Zm00001d018076_P001	Maize	plastid	29.73	27.33
GSMUA_Achr7P17710_001	Banana	mitochondrion	27.7	26.97
GSMUA_Achr9P13000_001	Banana	mitochondrion, nucleus	25.68	26.03
KRH18875	Soybean	mitochondrion	25.0	25.87
TraesCS7D01G183500.1	Wheat	mitochondrion	24.32	25.35
GSMUA_Achr6P04060_001	Banana	mitochondrion, nucleus	25.0	23.87
GSMUA_Achr8P18580_001	Banana	cytosol, mitochondrion, nucleus, plastid	25.0	23.27
GSMUA_Achr6P02010_001	Banana	mitochondrion, nucleus	24.32	23.23
PGSC0003DMT400022055	Potato	mitochondrion	21.62	23.19
GSMUA_Achr4P01820_001	Banana	mitochondrion	25.0	22.98
KRH62389	Soybean	mitochondrion	20.95	22.79
KRH16681	Soybean	mitochondrion	22.97	22.52
Solyc12g056950.1.1	Tomato	cytosol, mitochondrion	20.95	22.46
KRH53114	Soybean	nucleus	22.97	22.08
Solyc04g072780.2.1	Tomato	nucleus	24.32	21.43
CDX79243	Canola	cytosol, plastid	16.22	21.43
PGSC0003DMT400024491	Potato	nucleus	23.65	21.21
Bra015639.1-P	Field mustard	cytosol, mitochondrion, plastid	21.62	20.78
CDX88407	Canola	cytosol, mitochondrion	20.95	20.13
CDX87485	Canola	cytosol, mitochondrion	20.95	20.13
AT1G22160.1	Thale cress	mitochondrion, nucleus	19.59	19.73
TraesCS5D01G200000.1	Wheat	cytosol	21.62	19.28
CDY38242	Canola	mitochondrion, nucleus	20.27	19.11
CDY01294	Canola	nucleus	20.27	18.99
AT1G78020.1	Thale cress	mitochondrion	20.27	18.52
Bra031369.1-P	Field mustard	nucleus	19.59	18.47
CDY21344	Canola	nucleus	19.59	18.47
CDX68033	Canola	cytosol, mitochondrion	18.92	18.42
Bra003661.1-P	Field mustard	cytosol, mitochondrion	18.92	18.42
CDY14641	Canola	mitochondrion	20.27	18.4
CDY00425	Canola	nucleus	19.59	18.35
Bra008341.1-P	Field mustard	mitochondrion	19.59	17.79
CDY26845	Canola	mitochondrion	19.59	17.79
VIT_18s0001g05020.t01	Wine grape	extracellular, vacuole	25.0	17.79
Bra012309.1-P	Field mustard	nucleus	18.24	17.09

Protein Annotations

EnsemblPlants:TraesCS6D01G276200.1	EnsemblPlantsGene:TraesCS6D01G276200	InterPro:IPR007650	InterPro:Zf-FLZ_dom	PANTHER:PTHR33059	PANTHER:PTHR33059:SF4
PFAM:PF04570	PFscan:PS51795	SEG:seg	MapMan:27.3.3	:	:

Description

No Description!

Coordinates

chr6D:+:385165245..385166885

Molecular Weight (calculated)

16398.0 Da

IEP (calculated)

10.232

GRAVY (calculated)

-0.478

Length

148 amino acids

Sequence
(BLAST)

001: MLQKRPRSMV MRRKVSVASM PSVQRRVRQV RSDDKQARAR PIFFVSPCAE EMAAGGGGHH SLKRDAFTGL WMTAAFLAAC GICGKPLADK DAYIYRSEFA
101: FCTKECREMY IEKDIEMENK CRLRSIRKAP SDQSGSGGGS CSGPGKPI

Best Arabidopsis Sequence Match ( AT2G44670.1 )
(BLAST)

1: MASYYSGFLG CEEPHFLESC SLCRKHLGLN SDIFMYRGDK AFCSNECREE QIESDEAKER KWKKSSRSLR KNSSETKESA AGNTVRTGTL VVA

Arabidopsis Description

At2g44670/F16B22.16 [Source:UniProtKB/TrEMBL;Acc:O80506]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.