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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:nucleus
Plant-mPloc:nucleus
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g067030.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G22160.1 Solyc02g067030.2.1 AT3G29160.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400024491 Potato nucleus 86.31 87.88
CDX79242 Canola mitochondrion 7.74 72.22
GSMUA_Achr3P04440_001 Banana mitochondrion 43.45 55.73
Solyc12g056950.1.1 Tomato cytosol, mitochondrion 39.88 48.55
AT1G22160.1 Thale cress mitochondrion, nucleus 41.07 46.94
Bra012309.1-P Field mustard nucleus 42.86 45.57
GSMUA_Achr6P02010_001 Banana mitochondrion, nucleus 41.67 45.16
CDY00425 Canola nucleus 42.26 44.94
GSMUA_Achr9P13000_001 Banana mitochondrion, nucleus 38.69 44.52
CDY01294 Canola nucleus 41.67 44.3
GSMUA_Achr10P... Banana nucleus 38.69 44.22
TraesCS7A01G182100.1 Wheat mitochondrion 36.31 44.2
GSMUA_Achr7P17710_001 Banana mitochondrion 39.88 44.08
TraesCS7B01G086900.1 Wheat mitochondrion, nucleus 35.71 42.86
CDX88407 Canola cytosol, mitochondrion 39.29 42.86
Bra015639.1-P Field mustard cytosol, mitochondrion, plastid 39.29 42.86
CDY21344 Canola nucleus 39.88 42.68
Bra031369.1-P Field mustard nucleus 39.88 42.68
AT1G78020.1 Thale cress mitochondrion 41.07 42.59
TraesCS7D01G183500.1 Wheat mitochondrion 35.71 42.25
CDX87485 Canola cytosol, mitochondrion 38.69 42.21
OQU76080 Sorghum cytosol 33.33 41.79
Os06t0223700-01 Rice cytosol, mitochondrion, nucleus, plastid 34.52 40.85
CDX68033 Canola cytosol, mitochondrion 36.9 40.79
CDY26845 Canola mitochondrion 39.29 40.49
Bra008341.1-P Field mustard mitochondrion 39.29 40.49
GSMUA_Achr4P01820_001 Banana mitochondrion 38.69 40.37
CDX79243 Canola cytosol, plastid 26.79 40.18
Bra003661.1-P Field mustard cytosol, mitochondrion 36.31 40.13
CDY38242 Canola mitochondrion, nucleus 37.5 40.13
CDY14641 Canola mitochondrion 38.69 39.88
GSMUA_Achr5P24390_001 Banana cytosol 29.76 39.68
Solyc04g054760.2.1 Tomato mitochondrion, nucleus 34.52 37.18
Zm00001d044849_P001 Maize plastid 32.74 35.03
GSMUA_Achr6P04060_001 Banana mitochondrion, nucleus 31.55 34.19
Os02t0751300-01 Rice mitochondrion 29.76 34.01
Zm00001d020264_P001 Maize nucleus 36.31 33.7
GSMUA_Achr8P18580_001 Banana cytosol, mitochondrion, nucleus, plastid 31.55 33.33
Zm00001d032292_P001 Maize mitochondrion 37.5 33.33
EES14968 Sorghum mitochondrion 38.1 32.16
TraesCS5D01G200000.1 Wheat cytosol 31.55 31.93
Os09t0367900-02 Rice cytosol 33.33 31.82
TraesCS5A01G191000.1 Wheat cytosol 30.95 31.33
Zm00001d018076_P001 Maize plastid 29.76 31.06
EER96652 Sorghum nucleus 36.31 30.96
Solyc05g051860.2.1 Tomato nucleus 27.38 30.87
Zm00001d050285_P001 Maize mitochondrion 33.93 30.81
Zm00001d052234_P001 Maize plastid 28.57 30.57
Zm00001d005657_P002 Maize nucleus 32.14 30.51
KXG30742 Sorghum plastid 29.17 30.25
TraesCS6B01G331900.1 Wheat mitochondrion 26.79 29.22
Os08t0407600-01 Rice mitochondrion 34.52 29.15
HORVU6Hr1G073620.1 Barley mitochondrion 22.62 28.15
TraesCS6D01G282200.1 Wheat mitochondrion 25.6 27.92
TraesCS6A01G302700.1 Wheat mitochondrion 25.6 26.88
TraesCS6A01G295900.1 Wheat mitochondrion 20.83 24.82
TraesCS6D01G276200.1 Wheat mitochondrion 21.43 24.32
TraesCS6A01G295600.1 Wheat mitochondrion 21.43 24.32
TraesCS6A01G295800.1 Wheat mitochondrion 19.64 23.4
TraesCS6D01G276300.1 Wheat mitochondrion 19.05 22.7
TraesCS6B01G325700.1 Wheat mitochondrion 19.05 21.19
TraesCS6B01G325800.1 Wheat nucleus, plastid 19.64 20.37
HORVU6Hr1G075130.1 Barley mitochondrion 18.45 19.14
Protein Annotations
EnsemblPlants:Solyc04g072780.2.1EnsemblPlantsGene:Solyc04g072780.2InterPro:IPR007650InterPro:Zf-FLZ_domPANTHER:PTHR33059PANTHER:PTHR33059:SF74
PFAM:PF04570PFscan:PS51795SEG:segUniParc:UPI000276718CUniProt:K4BTR5MapMan:27.3.3
Description
No Description!
Coordinates
chr4:+:59757433..59758518
Molecular Weight (calculated)
18798.4 Da
IEP (calculated)
9.956
GRAVY (calculated)
-0.649
Length
168 amino acids
Sequence
(BLAST)
001: MLLGKRTRPP MKRTTSMTEF TLDLNLNNPD PNSSLSNYNN PFDPHNPFSP ANTQQQHLDQ QRLLTAAKTV SVRNRRKSAD FLETANFLKA CFLCKRRLIP
101: GRDIYMYRGD SAFCSLECRQ QQMNLDEKKD KCSLVASRKD YMKNSVAAAV AGGKGSDVSA TSETVAAV
Best Arabidopsis Sequence Match ( AT1G22160.1 )
(BLAST)
001: MLLGKRQRPP IKRTTSLSEI KFDLNQPSEQ EPSDHQIQLV NVDEHRQVHQ RLLDQRLLAM VSPRGTQRRH SSDYSEDFLR SCSLCKRLLV HGRDIYMYRG
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VY80]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.