Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d005108_P003 | |
| Zm00001d010811_P002 | |
| Zm00001d038745_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22160.1 | Zm00001d005108_P003 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | Zm00001d010811_P002 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | Zm00001d038745_P002 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d005657_P002 | Maize | nucleus | 65.75 | 67.23 |
| EER96652 | Sorghum | nucleus | 69.06 | 63.45 |
| GSMUA_Achr3P04440_001 | Banana | mitochondrion | 42.54 | 58.78 |
| TraesCS5D01G200000.1 | Wheat | cytosol | 53.04 | 57.83 |
| Os09t0367900-02 | Rice | cytosol | 55.8 | 57.39 |
| TraesCS5A01G191000.1 | Wheat | cytosol | 52.49 | 57.23 |
| CDX79242 | Canola | mitochondrion | 4.97 | 50.0 |
| GSMUA_Achr9P13000_001 | Banana | mitochondrion, nucleus | 39.23 | 48.63 |
| Zm00001d032292_P001 | Maize | mitochondrion | 50.28 | 48.15 |
| GSMUA_Achr6P02010_001 | Banana | mitochondrion, nucleus | 40.33 | 47.1 |
| Zm00001d050285_P001 | Maize | mitochondrion | 47.51 | 46.49 |
| GSMUA_Achr10P... | Banana | nucleus | 36.46 | 44.9 |
| GSMUA_Achr7P17710_001 | Banana | mitochondrion | 37.02 | 44.08 |
| GSMUA_Achr4P01820_001 | Banana | mitochondrion | 38.12 | 42.86 |
| KRH62389 | Soybean | mitochondrion | 32.04 | 42.65 |
| KRH16681 | Soybean | mitochondrion | 33.7 | 40.4 |
| CDX79243 | Canola | cytosol, plastid | 24.86 | 40.18 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 30.39 | 39.86 |
| KRH18875 | Soybean | mitochondrion | 30.94 | 39.16 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 29.83 | 39.13 |
| KRH53114 | Soybean | nucleus | 33.15 | 38.96 |
| GSMUA_Achr5P24390_001 | Banana | cytosol | 27.07 | 38.89 |
| Zm00001d052234_P001 | Maize | plastid | 33.7 | 38.85 |
| Bra015639.1-P | Field mustard | cytosol, mitochondrion, plastid | 32.04 | 37.66 |
| Zm00001d044849_P001 | Maize | plastid | 32.6 | 37.58 |
| CDX88407 | Canola | cytosol, mitochondrion | 31.49 | 37.01 |
| CDX87485 | Canola | cytosol, mitochondrion | 31.49 | 37.01 |
| Zm00001d018076_P001 | Maize | plastid | 32.6 | 36.65 |
| PGSC0003DMT400024491 | Potato | nucleus | 33.15 | 36.36 |
| Solyc04g072780.2.1 | Tomato | nucleus | 33.7 | 36.31 |
| CDY26845 | Canola | mitochondrion | 32.6 | 36.2 |
| Bra008341.1-P | Field mustard | mitochondrion | 32.6 | 36.2 |
| CDX68033 | Canola | cytosol, mitochondrion | 30.39 | 36.18 |
| Bra012309.1-P | Field mustard | nucleus | 31.49 | 36.08 |
| GSMUA_Achr8P18580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.49 | 35.85 |
| CDY21344 | Canola | nucleus | 30.94 | 35.67 |
| Bra031369.1-P | Field mustard | nucleus | 30.94 | 35.67 |
| CDY14641 | Canola | mitochondrion | 32.04 | 35.58 |
| Bra003661.1-P | Field mustard | cytosol, mitochondrion | 29.83 | 35.53 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 28.73 | 35.37 |
| CDY00425 | Canola | nucleus | 29.83 | 34.18 |
| GSMUA_Achr6P04060_001 | Banana | mitochondrion, nucleus | 28.73 | 33.55 |
| CDY01294 | Canola | nucleus | 29.28 | 33.54 |
| AT1G78020.1 | Thale cress | mitochondrion | 29.83 | 33.33 |
| CDY38242 | Canola | mitochondrion, nucleus | 28.73 | 33.12 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 36.46 | 31.73 |
Protein Annotations
| EMBL:BT036762 | EMBL:BT069277 | EMBL:EU956467 | EnsemblPlants:Zm00001d020264_P001 | EnsemblPlants:Zm00001d020264_T001 | EnsemblPlantsGene:Zm00001d020264 |
| EntrezGene:100272233 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF2 | PFAM:PF04570 |
| PFscan:PS51795 | ProteinID:ONM54629.1 | SEG:seg | UniParc:UPI00017B6F1B | UniProt:B4FI24 | MapMan:27.3.3 |
Description
No Description!
Coordinates
chr7:+:102995536..102997073
Molecular Weight (calculated)
19106.4 Da
IEP (calculated)
8.373
GRAVY (calculated)
-0.562
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVGKRERDC KNPMRRTTSM TEFAPPDALA AVMEDEEGPQ LSDDSSRDGG QQDWLSALGG GGGGVGGAAA QEDWLAAYHA RAAPARAGLR RNSADYSAVE
101: TAAFLRACGL CRRRLGPGRD TFMYKGEAAF CSLECRERHM TQEEWKDKCA VTSIKDAAAG SAKVKGRRAG SGKAGGTVAA A
101: TAAFLRACGL CRRRLGPGRD TFMYKGEAAF CSLECRERHM TQEEWKDKCA VTSIKDAAAG SAKVKGRRAG SGKAGGTVAA A
001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
Arabidopsis Description
F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.