Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- peroxisome 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G22160.1 | EES01406 | AT3G29160.1 | 21798944 |
| AT1G22160.1 | EES19859 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020264_P001 | Maize | nucleus | 63.45 | 69.06 |
| Zm00001d005657_P002 | Maize | nucleus | 60.91 | 67.8 |
| TraesCS5D01G200000.1 | Wheat | cytosol | 54.31 | 64.46 |
| TraesCS5A01G191000.1 | Wheat | cytosol | 53.3 | 63.25 |
| Os09t0367900-02 | Rice | cytosol | 53.81 | 60.23 |
| GSMUA_Achr3P04440_001 | Banana | mitochondrion | 39.59 | 59.54 |
| GSMUA_Achr9P13000_001 | Banana | mitochondrion, nucleus | 37.06 | 50.0 |
| EES14968 | Sorghum | mitochondrion | 49.24 | 48.74 |
| GSMUA_Achr6P02010_001 | Banana | mitochondrion, nucleus | 36.55 | 46.45 |
| GSMUA_Achr4P01820_001 | Banana | mitochondrion | 37.56 | 45.96 |
| CDX79242 | Canola | mitochondrion | 4.06 | 44.44 |
| GSMUA_Achr7P17710_001 | Banana | mitochondrion | 32.99 | 42.76 |
| GSMUA_Achr10P... | Banana | nucleus | 31.47 | 42.18 |
| KRH18875 | Soybean | mitochondrion | 30.46 | 41.96 |
| OQU76080 | Sorghum | cytosol | 27.92 | 41.04 |
| GSMUA_Achr8P18580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 32.99 | 40.88 |
| KRH62389 | Soybean | mitochondrion | 26.9 | 38.97 |
| KXG30742 | Sorghum | plastid | 31.98 | 38.89 |
| GSMUA_Achr5P24390_001 | Banana | cytosol | 24.87 | 38.89 |
| KRH16681 | Soybean | mitochondrion | 29.44 | 38.41 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 26.9 | 38.41 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 26.9 | 38.41 |
| CDY21344 | Canola | nucleus | 29.95 | 37.58 |
| Bra031369.1-P | Field mustard | nucleus | 29.95 | 37.58 |
| CDX79243 | Canola | cytosol, plastid | 21.32 | 37.5 |
| Bra012309.1-P | Field mustard | nucleus | 29.95 | 37.34 |
| Solyc04g072780.2.1 | Tomato | nucleus | 30.96 | 36.31 |
| CDY00425 | Canola | nucleus | 28.93 | 36.08 |
| CDY01294 | Canola | nucleus | 28.93 | 36.08 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 26.9 | 36.05 |
| PGSC0003DMT400024491 | Potato | nucleus | 29.44 | 35.15 |
| KRH53114 | Soybean | nucleus | 27.41 | 35.06 |
| Bra015639.1-P | Field mustard | cytosol, mitochondrion, plastid | 27.41 | 35.06 |
| CDY38242 | Canola | mitochondrion, nucleus | 27.92 | 35.03 |
| CDX88407 | Canola | cytosol, mitochondrion | 26.9 | 34.42 |
| CDX87485 | Canola | cytosol, mitochondrion | 26.9 | 34.42 |
| Bra008341.1-P | Field mustard | mitochondrion | 28.43 | 34.36 |
| CDY26845 | Canola | mitochondrion | 28.43 | 34.36 |
| CDX68033 | Canola | cytosol, mitochondrion | 26.4 | 34.21 |
| Bra003661.1-P | Field mustard | cytosol, mitochondrion | 25.89 | 33.55 |
| CDY14641 | Canola | mitochondrion | 27.41 | 33.13 |
| GSMUA_Achr6P04060_001 | Banana | mitochondrion, nucleus | 25.38 | 32.26 |
| AT1G78020.1 | Thale cress | mitochondrion | 26.4 | 32.1 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 31.98 | 30.29 |
Protein Annotations
| EnsemblPlants:EER96652 | EnsemblPlantsGene:SORBI_3002G183900 | EntrezGene:8056172 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 |
| PANTHER:PTHR33059:SF2 | PFAM:PF04570 | PFscan:PS51795 | ProteinID:EER96652 | ProteinID:EER96652.1 | RefSeq:XP_002460131.1 |
| SEG:seg | UniParc:UPI0001A83A5B | UniProt:C5XBA2 | MapMan:27.3.3 | : | : |
Description
hypothetical protein
Coordinates
chr2:+:56692557..56696129
Molecular Weight (calculated)
20857.4 Da
IEP (calculated)
9.079
GRAVY (calculated)
-0.605
Length
197 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGKRERDCK NPMRRTTSMT EFAPPDALAA VMEDEEEAQL PYNSHISSRG AAAGGGQQQQ QQQQDWLSAF VGGGGGAGPG GAAAQEDWLA AYRARAAPAR
101: AGLRRNSADY SVVETAAFLR ACGLCRRRLG PGRDTFMYKG EAAFCSLECR ERHITQEEWK DKCALTTSIK DAAAGAAKAN GRRSSGTGKA GGRVAAA
101: AGLRRNSADY SVVETAAFLR ACGLCRRRLG PGRDTFMYKG EAAFCSLECR ERHITQEEWK DKCALTTSIK DAAAGAAKAN GRRSSGTGKA GGRVAAA
001: MLLGKRQRPP IKRTTSLSEI KFDLNQPSEQ EPSDHQIQLV NVDEHRQVHQ RLLDQRLLAM VSPRGTQRRH SSDYSEDFLR SCSLCKRLLV HGRDIYMYRG
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
101: DRAFCSLECR QQQITVDERK EKKKGSVRST IVVATGTTTG ERVSAAV
Arabidopsis Description
Senescence-associated family protein (DUF581) [Source:UniProtKB/TrEMBL;Acc:Q8VY80]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.