Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G200000.1 | Wheat | cytosol | 97.59 | 97.59 |
| Os09t0367900-02 | Rice | cytosol | 64.46 | 60.8 |
| Zm00001d005657_P002 | Maize | nucleus | 61.45 | 57.63 |
| EER96652 | Sorghum | nucleus | 63.25 | 53.3 |
| Zm00001d020264_P001 | Maize | nucleus | 57.23 | 52.49 |
| GSMUA_Achr3P04440_001 | Banana | mitochondrion | 40.36 | 51.15 |
| GSMUA_Achr9P13000_001 | Banana | mitochondrion, nucleus | 39.16 | 44.52 |
| TraesCS7A01G182100.1 | Wheat | mitochondrion | 36.14 | 43.48 |
| GSMUA_Achr10P... | Banana | nucleus | 36.14 | 40.82 |
| GSMUA_Achr7P17710_001 | Banana | mitochondrion | 37.35 | 40.79 |
| GSMUA_Achr6P02010_001 | Banana | mitochondrion, nucleus | 37.35 | 40.0 |
| CDX79243 | Canola | cytosol, plastid | 25.9 | 38.39 |
| GSMUA_Achr4P01820_001 | Banana | mitochondrion | 36.75 | 37.89 |
| AT1G22160.1 | Thale cress | mitochondrion, nucleus | 32.53 | 36.73 |
| KRH18875 | Soybean | mitochondrion | 31.33 | 36.36 |
| GSMUA_Achr5P24390_001 | Banana | cytosol | 27.11 | 35.71 |
| CDY21344 | Canola | nucleus | 33.13 | 35.03 |
| Bra031369.1-P | Field mustard | nucleus | 33.13 | 35.03 |
| KRH62389 | Soybean | mitochondrion | 28.31 | 34.56 |
| KRH53114 | Soybean | nucleus | 31.93 | 34.42 |
| Bra012309.1-P | Field mustard | nucleus | 32.53 | 34.18 |
| CDY01294 | Canola | nucleus | 32.53 | 34.18 |
| KRH16681 | Soybean | mitochondrion | 30.72 | 33.77 |
| CDY00425 | Canola | nucleus | 31.93 | 33.54 |
| GSMUA_Achr8P18580_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.93 | 33.33 |
| CDX87485 | Canola | cytosol, mitochondrion | 30.72 | 33.12 |
| CDY38242 | Canola | mitochondrion, nucleus | 30.72 | 32.48 |
| Bra015639.1-P | Field mustard | cytosol, mitochondrion, plastid | 30.12 | 32.47 |
| CDX68033 | Canola | cytosol, mitochondrion | 29.52 | 32.24 |
| CDX88407 | Canola | cytosol, mitochondrion | 29.52 | 31.82 |
| Bra003661.1-P | Field mustard | cytosol, mitochondrion | 28.92 | 31.58 |
| AT1G78020.1 | Thale cress | mitochondrion | 30.72 | 31.48 |
| CDY14641 | Canola | mitochondrion | 30.72 | 31.29 |
| CDY26845 | Canola | mitochondrion | 30.72 | 31.29 |
| Bra008341.1-P | Field mustard | mitochondrion | 30.72 | 31.29 |
| TraesCS6A01G302700.1 | Wheat | mitochondrion | 30.12 | 31.25 |
| Solyc04g072780.2.1 | Tomato | nucleus | 31.33 | 30.95 |
| PGSC0003DMT400024491 | Potato | nucleus | 30.12 | 30.3 |
| PGSC0003DMT400022055 | Potato | mitochondrion | 24.1 | 28.99 |
| Solyc12g056950.1.1 | Tomato | cytosol, mitochondrion | 24.1 | 28.99 |
| GSMUA_Achr6P04060_001 | Banana | mitochondrion, nucleus | 26.51 | 28.39 |
| CDX79242 | Canola | mitochondrion | 3.01 | 27.78 |
| VIT_18s0001g05020.t01 | Wine grape | extracellular, vacuole | 33.13 | 26.44 |
| TraesCS6A01G295900.1 | Wheat | mitochondrion | 22.29 | 26.24 |
| TraesCS6A01G295800.1 | Wheat | mitochondrion | 21.69 | 25.53 |
| TraesCS6A01G295600.1 | Wheat | mitochondrion | 19.28 | 21.62 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G191000.1 | EnsemblPlantsGene:TraesCS5A01G191000 | InterPro:IPR007650 | InterPro:Zf-FLZ_dom | PANTHER:PTHR33059 | PANTHER:PTHR33059:SF2 |
| PFAM:PF04570 | PFscan:PS51795 | SEG:seg | MapMan:27.3.3 | : | : |
Description
No Description!
Coordinates
chr5A:-:395303485..395304102
Molecular Weight (calculated)
17567.5 Da
IEP (calculated)
7.344
GRAVY (calculated)
-0.502
Length
166 amino acids
Sequence
(BLAST)
(BLAST)
001: MRRTTSLREV APPSVLAVVL EDEDEDEQAK AVVQAEEGGA GGGQDWLAAL GGGSGAPGTD WLAAYRARAA PARAGLRRNS ADYSKVETAA FLRHCGLCRR
101: LLGPGRDTFM YKGEAAFCSL ECRQQHITHE EWKDKCTPRS MSEAAAPATS RGRSGKTDTG GTVAAA
101: LLGPGRDTFM YKGEAAFCSL ECRQQHITHE EWKDKCTPRS MSEAAAPATS RGRSGKTDTG GTVAAA
001: MLLGKRQRPP INRTTSLSEI KFDLNLPSES EPSNQQKPTV ASPYGSNGQA VTAAVDQNRG FLDQRLLSMV TPRGNLRRHS GDFSDAGHFL RSCALCERLL
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
101: VPGRDIYMYR GDKAFCSSEC RQEQMAQDER KEKGKSAAPA KEPAVTAPAR AKPGKGRAAA AV
Arabidopsis Description
F28K19.24 [Source:UniProtKB/TrEMBL;Acc:Q9SGZ8]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.