Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G018100.1 | Wheat | mitochondrion, nucleus | 91.88 | 93.4 |
| TraesCS4B01G019600.1 | Wheat | mitochondrion | 90.91 | 90.32 |
| TraesCS3A01G448500.1 | Wheat | mitochondrion | 85.39 | 89.76 |
| HORVU4Hr1G003180.3 | Barley | mitochondrion | 84.42 | 84.69 |
| TraesCS7A01G442300.1 | Wheat | mitochondrion | 73.7 | 71.61 |
| TraesCS7A01G442100.1 | Wheat | mitochondrion | 72.4 | 71.02 |
| TraesCS7A01G441900.1 | Wheat | mitochondrion | 70.78 | 68.99 |
| TraesCS6A01G079900.1 | Wheat | cytosol, mitochondrion, plastid | 42.53 | 54.81 |
| TraesCS6A01G120700.1 | Wheat | nucleus | 45.13 | 52.85 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 47.08 | 43.94 |
| EER91098 | Sorghum | nucleus | 47.08 | 40.85 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 29.22 | 39.13 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 29.87 | 38.17 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 30.52 | 38.06 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 22.73 | 37.23 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 34.09 | 36.71 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 28.9 | 36.48 |
| Zm00001d033419_P001 | Maize | plastid | 32.14 | 35.36 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 33.77 | 34.9 |
| CDY07541 | Canola | cytosol | 26.3 | 34.62 |
| CDY09318 | Canola | cytosol | 26.3 | 34.62 |
| CDX94520 | Canola | cytosol | 26.3 | 34.62 |
| CDY21311 | Canola | cytosol | 26.3 | 34.62 |
| CDX87407 | Canola | nucleus | 33.77 | 32.91 |
| Bra035092.1-P | Field mustard | nucleus | 33.77 | 32.91 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 34.09 | 32.71 |
| VIT_10s0042g01070.t01 | Wine grape | nucleus | 31.82 | 32.34 |
| KRH43767 | Soybean | nucleus | 25.97 | 31.62 |
| VIT_19s0027g00740.t01 | Wine grape | nucleus | 31.49 | 31.39 |
| AT4G19700.1 | Thale cress | cytosol | 30.52 | 30.92 |
| CDX88507 | Canola | nucleus | 29.87 | 30.87 |
| KRH36722 | Soybean | nucleus | 30.52 | 30.32 |
| CDY01615 | Canola | cytosol | 29.87 | 30.16 |
| Bra012532.1-P | Field mustard | nucleus | 29.87 | 30.07 |
| CDY71607 | Canola | cytosol | 29.87 | 30.07 |
| KRH11729 | Soybean | nucleus | 30.52 | 30.03 |
| PGSC0003DMT400062617 | Potato | nucleus | 29.22 | 30.0 |
| KRG89416 | Soybean | nucleus | 30.52 | 29.94 |
| AT5G45100.1 | Thale cress | cytosol | 28.25 | 29.59 |
| Bra039533.1-P | Field mustard | cytosol, nucleus, plastid | 28.25 | 29.39 |
| CDY26402 | Canola | cytosol | 28.25 | 29.39 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 30.52 | 29.38 |
| Solyc02g031710.2.1 | Tomato | nucleus | 29.55 | 29.35 |
| AT3G12920.1 | Thale cress | nucleus | 30.84 | 28.36 |
| Bra034718.1-P | Field mustard | nucleus | 30.84 | 28.19 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 29.55 | 28.17 |
| Bra013423.1-P | Field mustard | nucleus | 26.95 | 28.04 |
| CDX79294 | Canola | nucleus | 27.6 | 27.96 |
| KRH13682 | Soybean | nucleus | 30.52 | 27.89 |
| CDY51918 | Canola | cytosol | 25.97 | 27.87 |
| CDY71192 | Canola | cytosol | 25.32 | 27.86 |
| CDY24237 | Canola | nucleus | 28.9 | 27.47 |
| AT1G79110.1 | Thale cress | nucleus | 31.82 | 27.37 |
| CDY64561 | Canola | nucleus | 30.19 | 27.35 |
| Bra001477.1-P | Field mustard | nucleus | 30.19 | 27.35 |
| Bra039354.1-P | Field mustard | cytosol | 28.57 | 27.08 |
| CDY43390 | Canola | cytosol | 28.57 | 27.08 |
| CDX82568 | Canola | nucleus | 29.87 | 27.06 |
| CDY13070 | Canola | cytosol | 24.35 | 26.88 |
| Bra027588.1-P | Field mustard | cytosol, nucleus, plastid | 24.35 | 26.88 |
| TraesCS2A01G290000.1 | Wheat | cytosol | 28.25 | 26.85 |
| Bra028364.1-P | Field mustard | cytosol, nucleus, plastid | 24.03 | 26.24 |
| CDY18062 | Canola | cytosol | 24.03 | 26.24 |
| CDY46345 | Canola | cytosol | 23.7 | 25.89 |
| TraesCS2A01G290100.1 | Wheat | cytosol | 25.97 | 24.77 |
| Solyc02g069180.2.1 | Tomato | plastid | 22.08 | 24.03 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 24.68 | 23.46 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 24.35 | 22.06 |
| CDY23552 | Canola | cytosol | 13.96 | 19.82 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 19.16 | 16.81 |
| TraesCS4A01G089200.1 | Wheat | plastid | 15.58 | 14.16 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G293700.1 | EnsemblPlantsGene:TraesCS4A01G293700 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF12 | PFscan:PS50089 | SEG:seg | MapMan:35.2 |
Description
No Description!
Coordinates
chr4A:+:595442919..595443945
Molecular Weight (calculated)
32315.4 Da
IEP (calculated)
7.002
GRAVY (calculated)
-0.228
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVDLQRLRH MLLATGGGHH QLANRPGASA AAMPASGPCY GAAVTGQPYA DLFTPPPTMS AADQYSELLA LAAVDLARKG DGAQEMTSGN KRRRVDEGSS
101: SVLGEVLAAH AQQQAVAVDH ILHRHARKMW AALAEQRRSH LRLIVSTVEA RAAKRLKAKD DEVERVRGMN WALEERLRSL YMEAQMWRDV AQSHDTAANV
201: LRADLQRVLD AQAVRGGGGG GGDGDGQDDA ESCCWGENQV PVCVEEAEVG TPAPTGGVGR CKGCGDGAAA VLLLPCRHLS VCAPCAASAQ ACPSCGCAKN
301: GSVCVNFS
101: SVLGEVLAAH AQQQAVAVDH ILHRHARKMW AALAEQRRSH LRLIVSTVEA RAAKRLKAKD DEVERVRGMN WALEERLRSL YMEAQMWRDV AQSHDTAANV
201: LRADLQRVLD AQAVRGGGGG GGDGDGQDDA ESCCWGENQV PVCVEEAEVG TPAPTGGVGR CKGCGDGAAA VLLLPCRHLS VCAPCAASAQ ACPSCGCAKN
301: GSVCVNFS
001: MAVQAHHMNI FSQFISPNRD CVKFQENMNH GEFEFTGGEV PLITGESFAV EPLAAKANFN KAESGLSYNF TVPPLSTKRQ RDFQFSDSNA PVKRRSVAFD
101: SSSPSLINVE LVSQIQNQQQ SEIDRFVAQQ TEKLRIEIEA RQQTQTRMLA SAVQNVIAKK LKEKDDEIVR IRNLNWVLQE RVKSLYVENQ IWRDIAQTNE
201: ANANTLRTNL DQVLAQLETF PTASAVVEDD AESSCGSCCG DGGGEAVTAV GGGCKRCGER EASVLVLPCR HLCLCTVCGG SALLRTCPVC DMVMNASVHV
301: NMSS
101: SSSPSLINVE LVSQIQNQQQ SEIDRFVAQQ TEKLRIEIEA RQQTQTRMLA SAVQNVIAKK LKEKDDEIVR IRNLNWVLQE RVKSLYVENQ IWRDIAQTNE
201: ANANTLRTNL DQVLAQLETF PTASAVVEDD AESSCGSCCG DGGGEAVTAV GGGCKRCGER EASVLVLPCR HLCLCTVCGG SALLRTCPVC DMVMNASVHV
301: NMSS
Arabidopsis Description
BOIE3 ubiquitin-protein ligase BOI [Source:UniProtKB/Swiss-Prot;Acc:O81851]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.