Factsheet for Bra039354.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43390	Canola	cytosol	100.0	100.0
CDY24237	Canola	nucleus	95.69	95.99
Bra034718.1-P	Field mustard	nucleus	83.38	80.42
AT3G12920.1	Thale cress	nucleus	80.62	78.21
Bra001477.1-P	Field mustard	nucleus	80.31	76.76
VIT_19s0027g00740.t01	Wine grape	nucleus	44.31	46.6
Bra035092.1-P	Field mustard	nucleus	44.62	45.89
KRH43767	Soybean	nucleus	35.08	45.06
GSMUA_Achr7P00850_001	Banana	plastid	31.69	44.78
GSMUA_Achr2P13160_001	Banana	plastid	32.62	42.91
KRH13682	Soybean	nucleus	44.31	42.73
GSMUA_Achr5P02100_001	Banana	plastid	31.69	42.21
GSMUA_Achr4P32070_001	Banana	nucleus	36.0	40.91
GSMUA_Achr4P23050_001	Banana	nucleus	22.46	38.83
GSMUA_Achr4P28300_001	Banana	nucleus	28.0	37.76
GSMUA_Achr6P31690_001	Banana	nucleus	34.15	37.25
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	33.85	37.16
Bra013423.1-P	Field mustard	nucleus	33.23	36.49
Bra012532.1-P	Field mustard	nucleus	33.23	35.29
GSMUA_Achr9P09830_001	Banana	nucleus	34.46	34.89
TraesCS3D01G441300.1	Wheat	mitochondrion	28.0	31.38
TraesCS3D01G441000.1	Wheat	mitochondrion	28.0	31.38
TraesCS7D01G431300.1	Wheat	mitochondrion	30.15	31.31
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	31.69	31.21
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	27.08	31.21
TraesCS3B01G484600.1	Wheat	cytosol	26.15	30.91
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	26.46	30.82
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	28.92	30.62
TraesCS3A01G448500.1	Wheat	mitochondrion	27.38	30.38
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	28.31	30.36
HORVU4Hr1G003180.3	Barley	mitochondrion	28.62	30.29
TraesCS7A01G442100.1	Wheat	mitochondrion	28.62	29.62
HORVU7Hr1G100540.2	Barley	mitochondrion	27.69	29.61
TraesCS7B01G340600.1	Wheat	mitochondrion	28.0	29.17
TraesCS7A01G442300.1	Wheat	mitochondrion	28.31	29.02
EER91098	Sorghum	nucleus	31.69	29.01
TraesCS7B01G340500.1	Wheat	mitochondrion	28.0	28.89
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	21.23	28.87
TraesCS7B01G340700.1	Wheat	mitochondrion	27.69	28.85
TraesCS4B01G019600.1	Wheat	mitochondrion	27.38	28.71
TraesCS4A01G293700.1	Wheat	mitochondrion	27.08	28.57
TraesCS7A01G441900.1	Wheat	mitochondrion	27.08	27.85
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	26.77	27.71
TraesCS7D01G431200.1	Wheat	mitochondrion	25.85	27.27
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	18.46	27.15
TraesCS6A01G120700.1	Wheat	nucleus	21.54	26.62
TraesCS6B01G149100.1	Wheat	nucleus	21.54	26.62
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	22.15	26.57
HORVU6Hr1G021960.1	Barley	plastid	21.23	26.44
HORVU6Hr1G021880.1	Barley	plastid	21.23	26.44
TraesCS6D01G110700.1	Wheat	nucleus	21.23	26.24
Zm00001d033419_P001	Maize	plastid	22.46	26.07
Bra034672.1-P	Field mustard	cytosol	19.69	25.5
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	18.15	25.11
Bra040255.1-P	Field mustard	nucleus	17.54	24.89
Bra017511.1-P	Field mustard	nucleus	21.85	23.51
Bra019910.1-P	Field mustard	nucleus, plastid	21.85	23.36
Bra014051.1-P	Field mustard	nucleus	20.92	21.86
Bra024967.1-P	Field mustard	plastid	16.62	21.86
Bra031495.1-P	Field mustard	nucleus	20.92	20.8
Bra018428.1-P	Field mustard	nucleus	20.92	20.12
Bra012650.1-P	Field mustard	nucleus	19.38	18.05
Bra022093.1-P	Field mustard	nucleus	11.69	17.27

Protein Annotations

EnsemblPlants:Bra039354.1	EnsemblPlants:Bra039354.1-P	EnsemblPlantsGene:Bra039354	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF7	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000253E8CA	UniProt:M4FE33	MapMan:35.1

Description

AT3G12920 (E=1e-134) | protein binding / zinc ion binding

Coordinates

chrScaffold000164:-:86558..87709

Molecular Weight (calculated)

36456.4 Da

IEP (calculated)

6.500

GRAVY (calculated)

-0.507

Length

325 amino acids

Sequence
(BLAST)

001: MAVEAHHLNP LFSSNREMMY PVEANGLVYT NQIRYNTLPA ATMPFNPTME CQTSTFNPVY NTSPVDFLVH QSMKPTIHSV DSSVTYNSDN NNGNNVNYLP
101: PVSSLRKRPR EESVVENPMP SQKRCTDPLM FLGQDLSSNV QHHNLDIDRL ISNHVEIMRM GIEEKRKEQG RKIMEAIEQG LMKTLRAKDE EINHIGKLNL
201: FLEEKVKSLT VENQLWRDMA QSNEATVNSL RSNLQQVLAA VERNRWEEPT TADDAQSCCG SSDEGDSTMM RTVSSTMCRS CGKGEASVLL LPCRHMCLCS
301: VCGSSINTCP ICKSPKNASL HVNLS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.