Factsheet for Bra031495.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24542	Canola	nucleus	100.0	100.0
AT1G60610.4	Thale cress	nucleus	82.57	79.41
Bra019910.1-P	Field mustard	nucleus, plastid	60.55	65.13
Bra018428.1-P	Field mustard	nucleus	66.97	64.79
KRH69583	Soybean	nucleus	54.43	52.82
KRH74575	Soybean	cytosol	54.13	52.52
VIT_01s0127g00360.t01	Wine grape	nucleus	54.43	50.42
PGSC0003DMT400035059	Potato	nucleus	50.46	49.7
Solyc05g005210.2.1	Tomato	nucleus	49.54	48.5
Bra040255.1-P	Field mustard	nucleus	26.61	37.99
Os02t0130300-02	Rice	cytosol, nucleus, plastid	35.17	33.53
TraesCSU01G113400.1	Wheat	nucleus	35.78	33.33
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	35.47	33.05
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	35.17	32.95
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	36.39	32.6
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	35.47	32.58
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	35.78	31.71
Bra024967.1-P	Field mustard	plastid	23.24	30.77
Bra014051.1-P	Field mustard	nucleus	27.22	28.62
Bra017511.1-P	Field mustard	nucleus	25.99	28.15
Bra012532.1-P	Field mustard	nucleus	22.02	23.53
Bra022093.1-P	Field mustard	nucleus	15.6	23.18
Bra013423.1-P	Field mustard	nucleus	20.49	22.64
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	19.27	22.58
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	20.18	22.3
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	18.65	21.63
Bra001477.1-P	Field mustard	nucleus	22.32	21.47
Bra035092.1-P	Field mustard	nucleus	20.49	21.2
Bra039354.1-P	Field mustard	cytosol	20.8	20.92
Bra034672.1-P	Field mustard	cytosol	15.6	20.32
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	14.37	20.0
Bra034718.1-P	Field mustard	nucleus	20.49	19.88
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	13.15	19.46
Bra012650.1-P	Field mustard	nucleus	20.18	18.91

Protein Annotations

EnsemblPlants:Bra031495.1	EnsemblPlants:Bra031495.1-P	EnsemblPlantsGene:Bra031495	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR013083
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF8	PFAM:PF13920	PIRSF:PIRSF036836
SEG:seg	UniParc:UPI0002544C8E	UniProt:M4ERR9	MapMan:35.1	:	:

Description

AT1G60610 (E=5e-143) | protein binding / zinc ion binding

Coordinates

chrA01:-:16981181..16982359

Molecular Weight (calculated)

37024.5 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.722

Length

327 amino acids

Sequence
(BLAST)

001: MLGGNNETPL PQDSQFQYQT NSSLNQLHLL GTMRAGCTID PINYFANDNL ATMSRNNSKR ARETETNHSI QRQQKLQSSL NYNYNNNSVA QDEAPKQNLV
101: STGLRLSYDN DERNSCANGS ITTPMFQSLG DSIRLDLDRQ KEDLDQFLKF QGNQLAKGVR DIKQRHVTSF VTALEKDVRK KLQEKDQEIE NMNKKNRELV
201: EKIKQVAVES QNWHYRAKYN ESVVNALKVN LQQVMSHGNN TNPCGVFAVE EGYGDSEIDD KAASYNYMNI PGMPNTGMRC KSCNVKEVSV LLVPCRHLSL
301: CKDCDVFTGF CPVCQSFKTS SVQVFFS

Best Arabidopsis Sequence Match ( AT1G60610.3 )
(BLAST)

001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF

Arabidopsis Description

At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.