Factsheet for Bra024967.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33511	Canola	nucleus	97.98	79.87
CDX77733	Canola	nucleus	96.76	79.67
Bra017511.1-P	Field mustard	nucleus	80.57	65.89
AT5G47050.1	Thale cress	nucleus	76.92	63.33
Bra022093.1-P	Field mustard	nucleus	48.99	55.0
KRH77271	Soybean	plastid	51.82	39.75
Bra012650.1-P	Field mustard	nucleus	55.87	39.54
KRH28216	Soybean	nucleus	51.42	38.6
Solyc06g061020.2.1	Tomato	nucleus	51.42	38.37
GSMUA_Achr2P12040_001	Banana	plastid	40.89	37.55
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	51.01	37.39
PGSC0003DMT400068387	Potato	nucleus	50.61	36.55
PGSC0003DMT400004642	Potato	nucleus	50.61	36.13
Solyc08g077460.2.1	Tomato	nucleus	50.61	35.92
Solyc08g007120.2.1	Tomato	nucleus	47.37	35.35
KRH04275	Soybean	nucleus	50.2	34.73
KRH57556	Soybean	nucleus	48.58	34.29
GSMUA_Achr4P30100_001	Banana	plastid	42.11	34.1
GSMUA_Achr8P14860_001	Banana	nucleus	44.94	32.94
GSMUA_Achr1P00560_001	Banana	nucleus	38.06	32.53
GSMUA_Achr2P18250_001	Banana	nucleus	43.32	32.42
Os02t0687500-01	Rice	cytosol, nucleus, plastid	41.7	32.39
PGSC0003DMT400052841	Potato	nucleus	45.34	32.09
Bra040255.1-P	Field mustard	nucleus	29.55	31.88
GSMUA_Achr4P21690_001	Banana	nucleus	41.7	31.79
TraesCS6D01G243000.1	Wheat	cytosol	38.46	28.44
TraesCS6B01G289500.1	Wheat	nucleus	38.46	28.11
Zm00001d017649_P001	Maize	plastid	37.65	28.1
TraesCS1D01G217800.1	Wheat	cytosol	36.03	27.73
Zm00001d047069_P001	Maize	cytosol	37.25	27.71
HORVU6Hr1G066640.4	Barley	nucleus	38.06	27.41
TraesCS6A01G262200.1	Wheat	nucleus	37.65	27.35
TraesCS1A01G215300.1	Wheat	cytosol	35.22	26.85
TraesCS1B01G228800.1	Wheat	cytosol	35.22	26.69
HORVU1Hr1G054930.3	Barley	cytosol	34.82	26.22
Os10t0565500-01	Rice	nucleus	37.25	26.21
EES05709	Sorghum	nucleus	37.25	26.06
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	36.44	25.86
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	34.41	25.3
Zm00001d051484_P001	Maize	nucleus, plastid	36.03	25.21
Bra019910.1-P	Field mustard	nucleus, plastid	30.77	25.0
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	21.86	24.43
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	22.27	23.4
Bra018428.1-P	Field mustard	nucleus	31.98	23.37
Bra031495.1-P	Field mustard	nucleus	30.77	23.24
Bra014051.1-P	Field mustard	nucleus	28.34	22.51
Bra034672.1-P	Field mustard	cytosol	22.67	22.31
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	25.1	20.95
Bra013423.1-P	Field mustard	nucleus	25.1	20.95
Bra012532.1-P	Field mustard	nucleus	25.1	20.26
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	21.86	19.35
Bra035092.1-P	Field mustard	nucleus	24.29	18.99
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	20.65	18.09
Bra039354.1-P	Field mustard	cytosol	21.86	16.62
Bra034718.1-P	Field mustard	nucleus	22.27	16.32
Bra001477.1-P	Field mustard	nucleus	22.27	16.18

Protein Annotations

EnsemblPlants:Bra024967.1	EnsemblPlants:Bra024967.1-P	EnsemblPlantsGene:Bra024967	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF13
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000253FAF8	UniProt:M4E861
MapMan:35.1	:	:	:	:	:

Description

AT5G47050 (E=2e-095) | protein binding / zinc ion binding

Coordinates

chrA06:-:24450283..24451103

Molecular Weight (calculated)

27511.2 Da

IEP (calculated)

5.474

GRAVY (calculated)

-0.695

Length

247 amino acids

Sequence
(BLAST)

001: MTSPMNPPPS TPPQFISRRQ TPNVVPTGLR LSQGQSQNRE QPSSSSSSFP MINEDIAGEI KRQSDELDIF LQTQDEQLRR MLAENSERHY RELLKTTEES
101: VRRRLREKEA EIEKATRRHA ELEARAMQIE TESRAWQARA ASKEAEATTL QARLQQAVAH GGGDTVAEPN SGSVDGVDEA EDAESAYVDP DRLELTGPSC
201: RICWRRSATV LALPCRHLIL CKGCDGSVRV CPLCLSSKNS SVEVFFS

Best Arabidopsis Sequence Match ( AT5G47050.1 )
(BLAST)

001: MAVQAHHHPS TLFFLNNGQE GNDQPHKSQF HSINAGVDTR KRAREVSSVI DLDITAAPMN PPPQTPPQVI GRRQNPNVVS TGLRLSREQS QNQEQRFLSF
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJQ8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.