Factsheet for Bra014051.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17048	Canola	cytosol	99.04	99.04
Bra040255.1-P	Field mustard	nucleus	60.13	81.66
AT1G45976.1	Thale cress	cytosol	79.1	75.69
KRH05668	Soybean	nucleus	62.06	56.43
Solyc04g078760.2.1	Tomato	nucleus	60.77	55.92
KRH15376	Soybean	nucleus, plastid	62.06	54.99
VIT_18s0001g10370.t01	Wine grape	nucleus	57.88	54.88
PGSC0003DMT400020551	Potato	nucleus	60.77	50.53
GSMUA_Achr10P...	Banana	nucleus	47.91	46.86
GSMUA_Achr6P10180_001	Banana	plastid	48.23	43.23
Zm00001d047856_P001	Maize	nucleus, plastid	45.02	42.55
EER95135	Sorghum	plastid	45.98	42.43
Os03t0263800-01	Rice	nucleus, plastid	46.62	42.4
GSMUA_Achr11P...	Banana	nucleus	50.48	41.98
Zm00001d028532_P001	Maize	nucleus, plastid	45.02	41.54
TraesCS4A01G089200.1	Wheat	plastid	45.02	41.3
TraesCS4B01G215100.1	Wheat	plastid	44.69	41.0
TraesCS4D01G215600.1	Wheat	plastid	44.69	41.0
HORVU4Hr1G061210.1	Barley	cytosol	45.34	34.14
Bra024967.1-P	Field mustard	plastid	22.51	28.34
Bra019910.1-P	Field mustard	nucleus, plastid	27.01	27.63
Bra031495.1-P	Field mustard	nucleus	28.62	27.22
Bra018428.1-P	Field mustard	nucleus	27.33	25.15
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	18.33	24.26
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	17.04	23.98
Bra034672.1-P	Field mustard	cytosol	19.29	23.9
Bra017511.1-P	Field mustard	nucleus	23.15	23.84
Bra035092.1-P	Field mustard	nucleus	22.51	22.15
Bra039354.1-P	Field mustard	cytosol	21.86	20.92
Bra001477.1-P	Field mustard	nucleus	22.83	20.88
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	19.29	20.27
Bra034718.1-P	Field mustard	nucleus	21.86	20.18
Bra013423.1-P	Field mustard	nucleus	18.97	19.93
Bra022093.1-P	Field mustard	nucleus	13.83	19.55
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	17.36	19.15
Bra012532.1-P	Field mustard	nucleus	18.65	18.95
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	16.72	18.64
Bra012650.1-P	Field mustard	nucleus	20.26	18.05

Protein Annotations

EnsemblPlants:Bra014051.1	EnsemblPlants:Bra014051.1-P	EnsemblPlantsGene:Bra014051	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10
PFAM:PF13920	PFscan:PS50089	PIRSF:PIRSF036836	UniParc:UPI0002546AFD	UniProt:M4DC39	MapMan:35.1

Description

AT1G45976 (E=2e-132) SBP1 | SBP1 (s-ribonuclease binding protein 1); protein binding / zinc ion binding

Coordinates

chrA08:-:4074426..4075858

Molecular Weight (calculated)

35095.8 Da

IEP (calculated)

4.851

GRAVY (calculated)

-0.460

Length

311 amino acids

Sequence
(BLAST)

001: MALPHHFDPH LQDSKSFRDF CGIDGQISPP ALGFESSTNL HEHPPYIPPF HVPGFAPGPA LQTDGADVGA GFEWNSICGR KSLKEMDFME NNSQLSSVDF
101: WQGRSVSTGL GLSLDNANGS ALLSLVGDDV DRELLRQDSE IDRFIKIQGD QLRQSILEKI QTSQRKTVSL MEERVIQKLR GKDEELEMIN RKSKELEVRI
201: EQLTLEAEAW QQRANYNENM IAALNYNLER AHGWPRESNM EEGCGDSELD DTASCFNGKA TMMMCRFCGV REVCMLLLPC KHMCLCKECE RKLSSCPLCQ
301: SSKFLGMEVY M

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.