Factsheet for VIT_18s0001g10370.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05668	Soybean	nucleus	72.87	69.88
KRH15376	Soybean	nucleus, plastid	73.17	68.38
Solyc04g078760.2.1	Tomato	nucleus	67.68	65.68
AT1G45976.1	Thale cress	cytosol	59.15	59.69
PGSC0003DMT400020551	Potato	nucleus	67.68	59.36
Bra040255.1-P	Field mustard	nucleus	41.16	58.95
CDY06767	Canola	cytosol	54.57	58.88
CDY17048	Canola	cytosol	55.49	58.52
CDY40841	Canola	cytosol	53.05	58.19
Bra014051.1-P	Field mustard	nucleus	54.88	57.88
CDY17103	Canola	cytosol	52.13	57.77
GSMUA_Achr10P...	Banana	nucleus	52.74	54.4
GSMUA_Achr6P10180_001	Banana	plastid	54.27	51.3
Zm00001d047856_P001	Maize	nucleus, plastid	49.09	48.94
Os03t0263800-01	Rice	nucleus, plastid	50.61	48.54
EER95135	Sorghum	plastid	49.39	48.07
TraesCS4B01G215100.1	Wheat	plastid	49.39	47.79
TraesCS4D01G215600.1	Wheat	plastid	49.39	47.79
TraesCS4A01G089200.1	Wheat	plastid	49.09	47.49
Zm00001d028532_P001	Maize	nucleus, plastid	47.87	46.59
GSMUA_Achr11P...	Banana	nucleus	51.83	45.45
HORVU4Hr1G061210.1	Barley	cytosol	49.09	38.98
VIT_17s0000g08570.t01	Wine grape	nucleus	28.66	28.14
VIT_01s0127g00360.t01	Wine grape	nucleus	28.96	26.91
VIT_03s0038g02450.t01	Wine grape	nucleus	17.38	26.39
VIT_19s0027g00740.t01	Wine grape	nucleus	20.12	21.36
VIT_18s0001g14740.t01	Wine grape	cytosol	18.6	21.33
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	20.73	20.18
VIT_10s0042g01070.t01	Wine grape	nucleus	18.29	19.8

Protein Annotations

ArrayExpress:VIT_18s0001g10370	EMBL:AM431320	EMBL:FN595227	EnsemblPlants:VIT_18s0001g10370.t01	EnsemblPlantsGene:VIT_18s0001g10370	Gene3D:3.30.40.10
InterPro:E3ligase_BOI_like	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10
PIRSF:PIRSF036836	ProteinID:CAN66984	ProteinID:CAN66984.1	ProteinID:CCB45835	ProteinID:CCB45835.1	RefSeq:XP_002282824
RefSeq:XP_002282824.2	SEG:seg	UniParc:UPI000210A940	UniProt:F6H1C6	MapMan:35.2	:

Description

No Description!

Coordinates

chr18:+:8692257..8698698

Molecular Weight (calculated)

37313.3 Da

IEP (calculated)

5.437

GRAVY (calculated)

-0.576

Length

328 amino acids

Sequence
(BLAST)

001: MAMPHHPFQQ ESKPYRNLYT NEGQISQQAA FYSTTNFQDQ SHHPPYIPPF HVEGFAPGPF AAADGDDGGG ELRWNYGLES KKKRLKEQDF LENHSQISSV
101: DFLQPRSVST GLGLSLDHGR MASSGDSAFI HLIGDDIDLE LQRQDAEIDR FLKVQSDRMR QAILEKVQAS QLQTMSLLED KVLRQLRDKE VEVESINKKN
201: MELEERMEQL TVEAGAWQQR AKYNENMITA LKFSLQRVYA QSRDSKEGCG DSEVDDTASC CNGRAIDFHL LCKENNDMRE LMTCKVCKVN GVCMLLLPCK
301: HLCLCKDCES KFSFCPLYVI LNPTEKSL

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.