CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15376	Soybean	nucleus, plastid	95.32	92.88
VIT_18s0001g10370.t01	Wine grape	nucleus	69.88	72.87
Solyc04g078760.2.1	Tomato	nucleus	69.3	70.12
AT1G45976.1	Thale cress	cytosol	62.28	65.54
Bra040255.1-P	Field mustard	nucleus	43.86	65.5
CDY40841	Canola	cytosol	56.14	64.21
CDY17103	Canola	cytosol	55.26	63.85
PGSC0003DMT400020551	Potato	nucleus	69.59	63.64
CDY06767	Canola	cytosol	56.43	63.49
CDY17048	Canola	cytosol	57.02	62.7
Bra014051.1-P	Field mustard	nucleus	56.43	62.06
GSMUA_Achr10P...	Banana	nucleus	53.22	57.23
GSMUA_Achr6P10180_001	Banana	plastid	56.14	55.33
Zm00001d047856_P001	Maize	nucleus, plastid	52.05	54.1
Os03t0263800-01	Rice	nucleus, plastid	54.09	54.09
EER95135	Sorghum	plastid	52.34	53.12
TraesCS4D01G215600.1	Wheat	plastid	51.75	52.21
TraesCS4B01G215100.1	Wheat	plastid	51.75	52.21
TraesCS4A01G089200.1	Wheat	plastid	51.75	52.21
Zm00001d028532_P001	Maize	nucleus, plastid	51.17	51.93
GSMUA_Achr11P...	Banana	nucleus	54.39	49.73
HORVU4Hr1G061210.1	Barley	cytosol	51.75	42.86
KRH69583	Soybean	nucleus	32.46	32.94
KRH74575	Soybean	cytosol	31.58	32.05
KRH43767	Soybean	nucleus	19.59	26.48
KRH77271	Soybean	plastid	23.68	25.16
KRH28216	Soybean	nucleus	23.68	24.62
KRH57556	Soybean	nucleus	23.1	22.57
KRH36722	Soybean	nucleus	19.88	21.94
KRH04275	Soybean	nucleus	22.81	21.85
KRH11729	Soybean	nucleus	19.59	21.41
KRH50476	Soybean	cytosol, nucleus, plastid	19.88	21.25
KRH13682	Soybean	nucleus	20.47	20.77
KRG94235	Soybean	cytosol	14.91	20.56
KRG89416	Soybean	nucleus	18.71	20.38
KRH24321	Soybean	cytosol	16.37	19.44
KRH60696	Soybean	nucleus, plastid	16.37	19.18
KRH51394	Soybean	nucleus	15.79	18.82
KRH29000	Soybean	cytosol	15.79	18.82

Protein Annotations

Gene3D:1.10.1170.10	Gene3D:1.10.533.10	EntrezGene:100811918	MapMan:35.1	EMBL:ACUP02010766	ncoils:Coil
InterPro:E3ligase_BOI_like	EnsemblPlantsGene:GLYMA_17G241100	UniProt:I1MXN1	InterPro:IPR001841	EnsemblPlants:KRH05668	ProteinID:KRH05668
ProteinID:KRH05668.1	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10
UniParc:UPI000233E68B	InterPro:Znf_RING	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:39647241..39650405

Molecular Weight (calculated)

38876.0 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.606

Length

342 amino acids

Sequence
(BLAST)

001: MAFPQHHFQQ HYQTQQQQQP QNKSFRNLQT IDGQMSQQVA FYNPTDLQDQ SQHPPYIPPF HVVGFAPGPV PPADGSDGGV DLQLQWNYGL EPERKRLKEQ
101: DFLENNSQIS SVDFLQPRSV STGLGLSLDN TRLTSTGDSA LLSLIGDDIE RELQQQDAEI DRFLKVQGGR LRQAVLEKVQ ATQLQSVSLI EDKILQKLRE
201: KEAMVESINK RNIELEDQME QLTVEAGSWQ QRARYNENMI AALKFNLQQA YVQSRDSKEG CGDSEVDDTA SCCNGRSLDF HLLSRENTDM KEMMTCKACR
301: VNEVTMVLLP CKHLCLCKDC ESKLSFCPLC QSSKFIGMEV YM

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.