Factsheet for PGSC0003DMT400020551

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078760.2.1	Tomato	nucleus	89.84	99.41
KRH05668	Soybean	nucleus	63.64	69.59
KRH15376	Soybean	nucleus, plastid	63.64	67.81
VIT_18s0001g10370.t01	Wine grape	nucleus	59.36	67.68
Bra040255.1-P	Field mustard	nucleus	39.84	65.07
AT1G45976.1	Thale cress	cytosol	54.01	62.15
CDY06767	Canola	cytosol	50.0	61.51
CDY17048	Canola	cytosol	51.07	61.41
CDY40841	Canola	cytosol	48.66	60.87
CDY17103	Canola	cytosol	48.13	60.81
Bra014051.1-P	Field mustard	nucleus	50.53	60.77
GSMUA_Achr10P...	Banana	nucleus	46.52	54.72
GSMUA_Achr6P10180_001	Banana	plastid	48.66	52.45
EER95135	Sorghum	plastid	46.52	51.63
Os03t0263800-01	Rice	nucleus, plastid	47.06	51.46
Zm00001d047856_P001	Maize	nucleus, plastid	45.19	51.37
Zm00001d028532_P001	Maize	nucleus, plastid	46.26	51.34
TraesCS4B01G215100.1	Wheat	plastid	45.72	50.44
TraesCS4D01G215600.1	Wheat	plastid	45.72	50.44
TraesCS4A01G089200.1	Wheat	plastid	45.45	50.15
GSMUA_Achr11P...	Banana	nucleus	49.47	49.47
HORVU4Hr1G061210.1	Barley	cytosol	45.99	41.65
PGSC0003DMT400035059	Potato	nucleus	28.34	31.93
PGSC0003DMT400046745	Potato	nucleus	27.27	30.72
PGSC0003DMT400062617	Potato	nucleus	19.25	24.0
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	19.79	22.91
PGSC0003DMT400052841	Potato	nucleus	20.86	22.35
PGSC0003DMT400004642	Potato	nucleus	20.59	22.25
PGSC0003DMT400015829	Potato	nucleus	14.97	22.22
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	14.71	20.83
PGSC0003DMT400068387	Potato	nucleus	18.98	20.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400020551	EnsemblPlantsGene:PGSC0003DMG400007961	EntrezGene:102592483	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF10
PFAM:PF13920	PFscan:PS50089	PGSC:PGSC0003DMG400007961	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI000294FD71
UniProt:M1ADP3	MapMan:35.2	:	:	:	:

Description

S-RNase-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400007961]

Coordinates

chr4:+:68022753..68025050

Molecular Weight (calculated)

42672.0 Da

IEP (calculated)

5.461

GRAVY (calculated)

-0.580

Length

374 amino acids

Sequence
(BLAST)

001: MALPHHHLQL HIQQQQPHQQ QQQQQSKSYR DLYNNMDGQI TTPVVYFNGS NLPEQSQHPP YIPPFQVVGL APGTADDGGL DLQWNYGLEP KKKRPKEQDF
101: MENNNSQISS VDLLQRRSVS TGLGLSLDNG RLASSCDSAF LGLVGDDIER ELQRQDAEID RYIKVQMNFP SGLALGDRVT WYLLMLLVGG GRYSVELVQG
201: DRLRQAVLEK VQANQIQAIT YVEEKVLQKL RERDTEVDDI NKKNMELELR MEQLDLEANA WQQRAKYNEN LINTLKVNLQ HVYAQSRDSK EGCGDSEVDD
301: TASCCNGRAT DLHLLCRDSK EMKELMTCRV CRTNEVCMLL LPCKHLCLCK ECESKLSLCP LCQSTKYIGM EVYM

Best Arabidopsis Sequence Match ( AT1G45976.1 )
(BLAST)

001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM

Arabidopsis Description

SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.