Factsheet for PGSC0003DMT400026783

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, mitochondrion, plastid, cytosol, nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 3
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400006642
PGSC0003DMT400009439
PGSC0003DMT400020517
PGSC0003DMT400024632
PGSC0003DMT400026040
PGSC0003DMT400030265
PGSC0003DMT400030843
PGSC0003DMT400042166
PGSC0003DMT400055636
PGSC0003DMT400058186
PGSC0003DMT400069855
PGSC0003DMT400075050
PGSC0003DMT400075531

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G19700.1	PGSC0003DMT400024632	AT2G24570.1	21798944
AT4G19700.1	PGSC0003DMT400075531	AT2G24570.1	21798944
AT4G19700.1	PGSC0003DMT400030265	AT2G33210.1	21798944
AT4G19700.1	PGSC0003DMT400069855	AT2G33210.1	21798944
AT4G19700.1	PGSC0003DMT400055636	AT2G43370.1	21798944
AT4G19700.1	PGSC0003DMT400006642	AT3G13860.1	21798944
AT4G19700.1	PGSC0003DMT400030843	AT4G02770.1	21798944
AT4G19700.1	PGSC0003DMT400020517	AT4G24240.1	21798944
AT4G19700.1	PGSC0003DMT400024632	AT4G31550.1	21798944
AT4G19700.1	PGSC0003DMT400075531	AT4G31550.1	21798944
AT4G19700.1	PGSC0003DMT400009439	AT4G36110.1	21798944
AT4G19700.1	PGSC0003DMT400058186	AT4G36110.1	21798944
AT4G19700.1	PGSC0003DMT400075050	AT4G36110.1	21798944
AT4G19700.1	PGSC0003DMT400042166	AT5G08330.1	21798944
AT4G19700.1	PGSC0003DMT400026040	AT5G38640.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069180.2.1	Tomato	plastid	82.66	94.35
PGSC0003DMT400062617	Potato	nucleus	66.56	71.67
VIT_10s0042g01070.t01	Wine grape	nucleus	50.46	53.8
KRH36722	Soybean	nucleus	48.92	50.97
KRH11729	Soybean	nucleus	48.92	50.48
GSMUA_Achr2P13160_001	Banana	plastid	36.84	48.18
CDX94520	Canola	cytosol	34.67	47.86
CDY07541	Canola	cytosol	34.67	47.86
CDY09318	Canola	cytosol	34.67	47.86
CDY21311	Canola	cytosol	34.67	47.86
KRG89416	Soybean	nucleus	45.82	47.13
KRH50476	Soybean	cytosol, nucleus, plastid	46.44	46.88
AT5G45100.1	Thale cress	cytosol	42.11	46.26
GSMUA_Achr7P00850_001	Banana	plastid	32.82	46.09
CDY26402	Canola	cytosol	41.8	45.61
Bra039533.1-P	Field mustard	cytosol, nucleus, plastid	41.8	45.61
GSMUA_Achr4P32070_001	Banana	nucleus	39.32	44.41
Bra013423.1-P	Field mustard	nucleus	40.56	44.26
AT4G19700.1	Thale cress	cytosol	41.49	44.08
GSMUA_Achr5P02100_001	Banana	plastid	33.13	43.85
CDY51918	Canola	cytosol	38.7	43.55
GSMUA_Achr4P28300_001	Banana	nucleus	32.2	43.15
GSMUA_Achr4P23050_001	Banana	nucleus	24.77	42.55
CDY71192	Canola	cytosol	36.22	41.79
Bra027588.1-P	Field mustard	cytosol, nucleus, plastid	35.91	41.58
CDY71607	Canola	cytosol	39.32	41.5
Bra012532.1-P	Field mustard	nucleus	39.32	41.5
CDY01615	Canola	cytosol	39.01	41.31
GSMUA_Achr6P31690_001	Banana	nucleus	38.08	41.28
CDY13070	Canola	cytosol	35.6	41.22
Bra028364.1-P	Field mustard	cytosol, nucleus, plastid	35.91	41.13
CDY18062	Canola	cytosol	35.6	40.78
CDY46345	Canola	cytosol	34.67	39.72
GSMUA_Achr9P09830_001	Banana	nucleus	37.77	38.01
TraesCS7D01G431300.1	Wheat	mitochondrion	31.89	32.91
TraesCS3A01G448500.1	Wheat	mitochondrion	29.72	32.76
TraesCS3D01G441300.1	Wheat	mitochondrion	28.79	32.07
TraesCS3B01G484600.1	Wheat	cytosol	27.24	32.0
TraesCS3D01G441000.1	Wheat	mitochondrion	28.48	31.72
TraesCS6A01G079900.1	Wheat	cytosol, mitochondrion, plastid	23.22	31.38
HORVU4Hr1G003180.3	Barley	mitochondrion	29.72	31.27
HORVU7Hr1G100540.2	Barley	mitochondrion	29.41	31.25
TraesCS7B01G340700.1	Wheat	mitochondrion	30.03	31.09
TraesCS7B01G340600.1	Wheat	mitochondrion	30.03	31.09
TraesCS4D01G018100.1	Wheat	mitochondrion, nucleus	29.1	31.02
TraesCS4B01G019600.1	Wheat	mitochondrion	29.72	30.97
HORVU7Hr1G100520.1	Barley	cytosol, mitochondrion	29.41	30.94
TraesCS7A01G442300.1	Wheat	mitochondrion	30.34	30.91
TraesCS7B01G340500.1	Wheat	mitochondrion	30.03	30.79
EER91098	Sorghum	nucleus	33.75	30.7
TraesCS7A01G442100.1	Wheat	mitochondrion	29.41	30.25
TraesCS7D01G431100.1	Wheat	mitochondrion, nucleus	29.1	29.94
TraesCS7D01G431200.1	Wheat	mitochondrion	28.17	29.55
TraesCS4A01G293700.1	Wheat	mitochondrion	28.17	29.55
TraesCS7A01G441900.1	Wheat	mitochondrion	28.79	29.43
Zm00001d013571_P001	Maize	cytosol, nucleus, plastid	30.03	29.39
TraesCS6D01G073600.1	Wheat	cytosol, nucleus, plastid	24.15	28.78
HORVU6Hr1G021880.1	Barley	plastid	23.22	28.74
HORVU6Hr1G021960.1	Barley	plastid	23.22	28.74
TraesCS6D01G110700.1	Wheat	nucleus	23.22	28.52
Zm00001d033419_P001	Maize	plastid	23.84	27.5
PGSC0003DMT400015829	Potato	nucleus	21.36	27.38
TraesCS6B01G149100.1	Wheat	nucleus	22.29	27.38
TraesCS6A01G120700.1	Wheat	nucleus	22.29	27.38
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	21.36	26.14
PGSC0003DMT400046745	Potato	nucleus	22.91	22.29
PGSC0003DMT400052841	Potato	nucleus	22.6	20.92
PGSC0003DMT400004642	Potato	nucleus	21.67	20.23
PGSC0003DMT400035059	Potato	nucleus	20.74	20.18
PGSC0003DMT400020551	Potato	nucleus	22.91	19.79
PGSC0003DMT400068387	Potato	nucleus	20.43	19.3

Protein Annotations

EnsemblPlants:PGSC0003DMT400026783	EnsemblPlantsGene:PGSC0003DMG400010342	EntrezGene:102579383	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR42647	PANTHER:PTHR42647:SF12	PFAM:PF13920
PFscan:PS50089	PGSC:PGSC0003DMG400010342	PIRSF:PIRSF036836	RefSeq:XP_006362609.1	SEG:seg	UniParc:UPI0002959623
UniProt:M1ANQ5	MapMan:35.1	:	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010342]

Coordinates

chr2:+:28229117..28230481

Molecular Weight (calculated)

35450.9 Da

IEP (calculated)

6.042

GRAVY (calculated)

-0.397

Length

323 amino acids

Sequence
(BLAST)

001: MAVEARHLNL FTQQQQQMVS NQGNGFSYNT QMGGSSLLPL STPENSFLPF HQSLMCDSVQ PKTSVNTDSG LTFNLPTTVN ATNAAAVAAT RKRSRDSFNQ
101: FNTCNTTSFV GDDVLPLLQQ YQCDIDRIIS LHTKKVRMEL EERQKHQARV LVAAIGEGVS KKLKEKDEQI QRMGKINMVL QEKVKSLFVE NQLWRDLAQT
201: NEATANSLRN NLEQVLAHVG DERISAGGNL AGAAVEEDAE SCCGSSDHGA AAEEEDEIEG RRTVVGEAQD NRMCKRCGER ESCVLLLPCR HLCLCAVCGS
301: SLVHTCPVCN SNMNATVHVN MSS

Best Arabidopsis Sequence Match ( AT3G12920.1 )
(BLAST)

001: MAVEAHHLNP LFSSNREMIH PVEASGVVYN TQMRYGTVPT FNPTVECQTS LFNPIYNISP VDRLVHQSMK PTIQSVDSSL TFNSDNNVDF LRPVSSRKRS
101: REESVVLNPS AYMQIQKNPT DPLMFLGQDL SSNVQQHHFD IDRLISNHVE RMRMEIEEKR KTQGRRIVEA VEQGLMKTLR AKDDEINHIG KLNLFLEEKV
201: KSLCVENQIW RDVAQSNEAT VNALRSNLQQ VLAAVERNRW EEPPTVADDA QSCCGSNDEG DSEEERWKLA GEAQDTKKMC RVGMSMCRSC GKGEASVLLL
301: PCRHMCLCSV CGSSLNTCPI CKSPKTASLH VNLSS

Arabidopsis Description

BRG3Probable BOI-related E3 ubiquitin-protein ligase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDD1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.