Factsheet for PGSC0003DMT400015829

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111610.2.1	Tomato	cytosol	86.51	89.71
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	64.68	61.74
VIT_03s0038g02450.t01	Wine grape	nucleus	44.05	51.39
AT4G35070.1	Thale cress	cytosol	44.44	42.26
CDY40647	Canola	cytosol	39.29	42.13
Bra017691.1-P	Field mustard	cytosol, extracellular, nucleus	38.89	41.7
CDX72513	Canola	cytosol	38.1	41.03
KRH51394	Soybean	nucleus	44.84	39.37
Bra034672.1-P	Field mustard	cytosol	38.89	39.04
CDX73168	Canola	cytosol	38.89	39.04
CDY15019	Canola	cytosol	38.89	39.04
CDX69109	Canola	nucleus	31.75	39.02
Bra011582.1-P	Field mustard	cytosol, nucleus, plastid	34.13	38.91
CDY52651	Canola	cytosol	33.73	38.46
KRH60696	Soybean	nucleus, plastid	44.44	38.36
CDY17506	Canola	cytosol, nucleus, plastid	38.49	38.34
CDX76311	Canola	cytosol	38.49	38.34
KRH24321	Soybean	cytosol	43.25	37.85
KRH29000	Soybean	cytosol	42.06	36.93
KRG94235	Soybean	cytosol	33.33	33.87
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	27.38	21.36
PGSC0003DMT400052841	Potato	nucleus	28.97	20.92
PGSC0003DMT400004642	Potato	nucleus	28.17	20.52
PGSC0003DMT400062617	Potato	nucleus	24.21	20.33
PGSC0003DMT400068387	Potato	nucleus	26.19	19.3
PGSC0003DMT400035059	Potato	nucleus	23.81	18.07
PGSC0003DMT400046745	Potato	nucleus	21.83	16.57
PGSC0003DMT400020551	Potato	nucleus	22.22	14.97

Protein Annotations

EnsemblPlants:PGSC0003DMT400015829	EnsemblPlantsGene:PGSC0003DMG400006187	EntrezGene:102600632	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR013083
InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF6	PFAM:PF13920	PGSC:PGSC0003DMG400006187
PIRSF:PIRSF036836	RefSeq:XP_006359701.1	SEG:seg	UniParc:UPI00029522E8	UniProt:M1A6N7	MapMan:35.1

Description

ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400006187]

Coordinates

chr1:+:87597051..87598241

Molecular Weight (calculated)

29321.1 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.598

Length

252 amino acids

Sequence
(BLAST)

001: MAIQAQLYTD NLLGGSMENA CGFNQFSFAT QQHQQPFQQN LQQQQIFNQK IIMNQNLMNN NITESIPFSQ FLATQMEKQR IEIDHFINLQ NEKLRWVLNE
101: QKKQQLALIW RKYESKLEFL LKQKDEEIAK AGNRTKELEE YLKKMEMENQ AWQRISNENE AIVMSLNNTI EQLRESGYCL STNGEDAESC CDLHDEDELE
201: TKKMICKSCN SRSSCMIFLP CRHLSSCKTC DSLLHQCPVC GIPKKAAIEA LF

Best Arabidopsis Sequence Match ( AT4G35070.1 )
(BLAST)

001: MAIQAQLNYN APNANQIGFG GSEFSLINNN GVIGIGNDQS YLVNNLQLQK DFNQHALFHH QHHQQQQSPS QSFLAAQMEK QKQEIDQFIK IQNERLRYVL
101: QEQRKREMEM ILRKMESKAL LLMSQKEEEM SKALNKNMEL EDLLRKMEME NQTWQRMARE NEAIVQTLNT TLEQVRERAA TCYDAGEAEV EDEGSFCGGE
201: GDGNSLPAKK MKMSSCCCNC GSNGVTRVLF LPCRHLCCCM DCEEGLLLCP ICNTPKKSRI EALIF

Arabidopsis Description

At4g35070 [Source:UniProtKB/TrEMBL;Acc:Q66GR4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.