Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g112860.2.1 | Tomato | nucleus, plastid | 81.93 | 84.21 |
| VIT_17s0000g08570.t01 | Wine grape | nucleus | 60.24 | 59.88 |
| PGSC0003DMT400035059 | Potato | nucleus | 44.28 | 44.28 |
| PGSC0003DMT400020551 | Potato | nucleus | 30.72 | 27.27 |
| PGSC0003DMT400068387 | Potato | nucleus | 24.4 | 23.68 |
| PGSC0003DMT400004642 | Potato | nucleus | 24.1 | 23.12 |
| PGSC0003DMT400062617 | Potato | nucleus | 20.78 | 23.0 |
| PGSC0003DMT400052841 | Potato | nucleus | 24.1 | 22.92 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 22.29 | 22.91 |
| PGSC0003DMT400015829 | Potato | nucleus | 16.57 | 21.83 |
| PGSC0003DMT400068728 | Potato | mitochondrion, nucleus | 15.36 | 19.32 |
Protein Annotations
| EntrezGene:102589416 | Gene3D:3.30.40.10 | MapMan:35.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | UniProt:M1BJJ7 | PFAM:PF13920 | EnsemblPlantsGene:PGSC0003DMG402018151 | PGSC:PGSC0003DMG402018151 | EnsemblPlants:PGSC0003DMT400046745 |
| PIRSF:PIRSF036836 | PFscan:PS50089 | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF9 | UniParc:UPI000295A2B2 | RefSeq:XP_006344405.1 |
| RefSeq:XP_015162862.1 | RefSeq:XP_015162863.1 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : |
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG402018151]
Coordinates
chr3:+:52667195..52672875
Molecular Weight (calculated)
37212.1 Da
IEP (calculated)
7.224
GRAVY (calculated)
-0.574
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGEGSSGNG LFPASLEGNR FQYNVAALPQ LQLFGDVTVG CSGYPISHTV NDHPSAALRP TKRARDVEPN YSQQKLQISL NNNFGQNEVD QAGSILNPIT
101: VSTGLRLSYE EKERNSSVTS APENMKAALP ARLPIDSGFK YEIDRQREEF DHYMKVQEDN MMKGMRELVH RQTVSLLNSL QKEVSRKLYE KDVEIDNMNR
201: KNRELGERIR QITVEAQSWH YRAKYNESVV NALKSNIQQA MAHGSMQAKE GCGDSEVNDA ASSTNYHLAS GSHDQVPNIH QLKCCRACKS KEANVLLVPC
301: RHLCLCKECE VFIDSCPVCQ VMKTASVQVY MS
101: VSTGLRLSYE EKERNSSVTS APENMKAALP ARLPIDSGFK YEIDRQREEF DHYMKVQEDN MMKGMRELVH RQTVSLLNSL QKEVSRKLYE KDVEIDNMNR
201: KNRELGERIR QITVEAQSWH YRAKYNESVV NALKSNIQQA MAHGSMQAKE GCGDSEVNDA ASSTNYHLAS GSHDQVPNIH QLKCCRACKS KEANVLLVPC
301: RHLCLCKECE VFIDSCPVCQ VMKTASVQVY MS
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
Arabidopsis Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.