Factsheet for PGSC0003DMT400052841

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001613
PGSC0003DMT400002609
PGSC0003DMT400006076
PGSC0003DMT400009142
PGSC0003DMT400009146
PGSC0003DMT400010993
PGSC0003DMT400013427
PGSC0003DMT400013430
PGSC0003DMT400013435
PGSC0003DMT400016192
PGSC0003DMT400018802
PGSC0003DMT400032975
PGSC0003DMT400035166
PGSC0003DMT400050381
PGSC0003DMT400056899
PGSC0003DMT400061915
PGSC0003DMT400062138
PGSC0003DMT400063997
PGSC0003DMT400066172
PGSC0003DMT400067905
PGSC0003DMT400068308
PGSC0003DMT400069831
PGSC0003DMT400076768
PGSC0003DMT400076868
PGSC0003DMT400082721
PGSC0003DMT400092162

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17680.1	PGSC0003DMT400002609	AT1G22840.1	21798944
AT4G17680.1	PGSC0003DMT400063997	AT1G22840.1	21798944
AT4G17680.1	PGSC0003DMT400066172	AT1G49850.1	21798944
AT4G17680.1	PGSC0003DMT400068308	AT1G67170.1	21798944
AT4G17680.1	PGSC0003DMT400061915	AT1G76760.1	21798944
AT4G17680.1	PGSC0003DMT400016192	AT2G32840.1	21798944
AT4G17680.1	PGSC0003DMT400056899	AT3G12930.1	21798944
AT4G17680.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT4G17680.1	PGSC0003DMT400009142	AT3G51180.1	21798944
AT4G17680.1	PGSC0003DMT400009146	AT3G51180.1	21798944
AT4G17680.1	PGSC0003DMT400092162	AT3G51180.1	21798944
AT4G17680.1	PGSC0003DMT400069831	AT3G54826.1	21798944
AT4G17680.1	PGSC0003DMT400018802	AT4G02150.1	21798944
AT4G17680.1	PGSC0003DMT400076768	AT4G02150.1	21798944
AT4G17680.1	PGSC0003DMT400035166	AT4G32020.1	21798944
AT4G17680.1	PGSC0003DMT400076868	AT4G32020.1	21798944
AT4G17680.1	PGSC0003DMT400010993	AT4G32190.1	21798944
AT4G17680.1	PGSC0003DMT400082721	AT4G32295.1	21798944
AT4G17680.1	PGSC0003DMT400006076	AT5G14070.1	21798944
AT4G17680.1	PGSC0003DMT400013427	AT5G14070.1	21798944
AT4G17680.1	PGSC0003DMT400013430	AT5G14070.1	21798944
AT4G17680.1	PGSC0003DMT400013435	AT5G14070.1	21798944
AT4G17680.1	PGSC0003DMT400032975	AT5G38420.1	21798944
AT4G17680.1	PGSC0003DMT400050381	AT5G38420.1	21798944
AT4G17680.1	PGSC0003DMT400062138	AT5G38420.1	21798944
AT4G17680.1	PGSC0003DMT400067905	AT5G38420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g007120.2.1	Tomato	nucleus	85.96	90.63
PGSC0003DMT400004642	Potato	nucleus	64.76	65.32
PGSC0003DMT400068387	Potato	nucleus	58.45	59.65
VIT_02s0012g00290.t01	Wine grape	cytosol, nucleus, plastid	53.01	54.9
KRH77271	Soybean	plastid	48.14	52.17
KRH28216	Soybean	nucleus	48.42	51.37
AT1G32740.1	Thale cress	nucleus	43.27	48.4
KRH04275	Soybean	nucleus	47.85	46.78
KRH57556	Soybean	nucleus	46.42	46.29
Bra024967.1-P	Field mustard	plastid	32.09	45.34
AT5G47050.1	Thale cress	nucleus	38.97	45.33
Bra017511.1-P	Field mustard	nucleus	38.97	45.03
CDY43447	Canola	nucleus	38.97	45.03
CDX77733	Canola	nucleus	38.4	44.67
CDY33511	Canola	nucleus	38.68	44.55
CDY37172	Canola	cytosol	37.54	43.38
CDY51856	Canola	cytosol	37.54	43.23
CDY03162	Canola	cytosol	38.4	41.61
GSMUA_Achr2P18250_001	Banana	nucleus	39.26	41.52
AT4G17680.1	Thale cress	nucleus	34.96	38.85
Bra022093.1-P	Field mustard	nucleus	24.36	38.64
GSMUA_Achr1P00560_001	Banana	nucleus	31.52	38.06
CDY09609	Canola	cytosol	26.65	37.65
CDX90458	Canola	cytosol	32.66	37.5
GSMUA_Achr2P12040_001	Banana	plastid	28.65	37.17
Os10t0565500-01	Rice	nucleus	36.68	36.47
GSMUA_Achr4P30100_001	Banana	plastid	31.81	36.39
Zm00001d047069_P001	Maize	cytosol	33.52	35.24
TraesCS1D01G217800.1	Wheat	cytosol	32.38	35.2
GSMUA_Achr4P21690_001	Banana	nucleus	32.66	35.19
TraesCS6D01G243000.1	Wheat	cytosol	33.24	34.73
TraesCS1B01G228800.1	Wheat	cytosol	32.09	34.36
TraesCS1A01G215300.1	Wheat	cytosol	31.81	34.26
TraesCS6B01G289500.1	Wheat	nucleus	32.95	34.02
EES05709	Sorghum	nucleus	34.38	33.99
Zm00001d029988_P001	Maize	cytosol, mitochondrion, nucleus	32.66	33.93
KXG38894	Sorghum	cytosol, mitochondrion, nucleus	33.81	33.91
GSMUA_Achr8P14860_001	Banana	nucleus	32.66	33.83
Os02t0687500-01	Rice	cytosol, nucleus, plastid	30.66	33.65
HORVU1Hr1G054930.3	Barley	cytosol	31.52	33.54
TraesCS6A01G262200.1	Wheat	nucleus	32.66	33.53
HORVU6Hr1G066640.4	Barley	nucleus	32.66	33.24
Zm00001d051484_P001	Maize	nucleus, plastid	32.66	32.29
Zm00001d017649_P001	Maize	plastid	30.37	32.02
Bra012650.1-P	Field mustard	nucleus	30.95	30.95
PGSC0003DMT400015829	Potato	nucleus	20.92	28.97
PGSC0003DMT400035059	Potato	nucleus	26.93	28.31
PGSC0003DMT400068728	Potato	mitochondrion, nucleus	20.34	26.89
PGSC0003DMT400046745	Potato	nucleus	22.92	24.1
PGSC0003DMT400026783	Potato	cytosol, mitochondrion, nucleus, plastid, vacuole	20.92	22.6
PGSC0003DMT400062617	Potato	nucleus	18.05	21.0
PGSC0003DMT400020551	Potato	nucleus	22.35	20.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400052841	EnsemblPlantsGene:PGSC0003DMG400020510	EntrezGene:102594630	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF13
PFAM:PF13920	PFscan:PS50089	PGSC:PGSC0003DMG400020510	PIRSF:PIRSF036836	RefSeq:XP_006362485.1	SEG:seg
UniParc:UPI000296A7E8	UniProt:M1BU24	MapMan:35.1	:	:	:

Description

Ubiquitin-protein ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400020510]

Coordinates

chr8:-:1083601..1085699

Molecular Weight (calculated)

39290.2 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.636

Length

349 amino acids

Sequence
(BLAST)

001: MAVQAQYPSN VLFLNRSVQE GKSQIGNNYS SLVLVQTQQQ QQQQSGVFGE ESFLDPTQML FNPTVEANSR KRRREHTLAT TTTTTETRNP LMSIQSQHQL
101: INLTQLHNNN SSQHQHQQHT NIVSTGLQLA FGDQFHHHHQ QHSVSHLSLH HQSSTIADDF LASHIKQQQH EIDHFLQLQG EQLRRTLEEK RKHLYHALIG
201: AVEESTARRL KERETEVEKA SRRNTELEAR ASQMIAEARA WQVKTCEQEV TAATLQAQLQ QAMVNGGGMS PPEGDGGGEA KDAESVYVDP DRVVESTGRP
301: SCKGCRKRFA SVVLLPCRHM CLCIECDVVA QSCPLCRSIR TSSVEVFLC

Best Arabidopsis Sequence Match ( AT1G32740.1 )
(BLAST)

001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC

Arabidopsis Description

SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.