Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43447 | Canola | nucleus | 89.75 | 95.7 |
| CDY33511 | Canola | nucleus | 74.84 | 79.54 |
| CDX77733 | Canola | nucleus | 73.91 | 79.33 |
| CDY37172 | Canola | cytosol | 70.5 | 75.17 |
| AT5G47050.1 | Thale cress | nucleus | 69.57 | 74.67 |
| CDY51856 | Canola | cytosol | 70.19 | 74.59 |
| CDY09609 | Canola | cytosol | 45.34 | 59.11 |
| CDX90458 | Canola | cytosol | 53.11 | 56.25 |
| KRH77271 | Soybean | plastid | 43.79 | 43.79 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 45.03 | 43.03 |
| KRH28216 | Soybean | nucleus | 43.79 | 42.86 |
| Solyc06g061020.2.1 | Tomato | nucleus | 43.48 | 42.3 |
| CDY34127 | Canola | extracellular | 7.76 | 41.67 |
| Solyc08g077460.2.1 | Tomato | nucleus | 44.72 | 41.38 |
| PGSC0003DMT400004642 | Potato | nucleus | 44.41 | 41.33 |
| Solyc08g007120.2.1 | Tomato | nucleus | 41.93 | 40.79 |
| PGSC0003DMT400068387 | Potato | nucleus | 43.17 | 40.64 |
| KRH04275 | Soybean | nucleus | 44.72 | 40.34 |
| KRH57556 | Soybean | nucleus | 42.86 | 39.43 |
| PGSC0003DMT400052841 | Potato | nucleus | 41.61 | 38.4 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 31.68 | 35.29 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 29.19 | 34.94 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 34.16 | 34.59 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 32.61 | 34.43 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 34.78 | 33.94 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 34.78 | 33.23 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 34.16 | 32.93 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 34.16 | 32.54 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 31.99 | 31.79 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 33.54 | 31.76 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 33.23 | 31.2 |
| Os10t0565500-01 | Rice | nucleus | 33.54 | 30.77 |
| Zm00001d047069_P001 | Maize | cytosol | 31.68 | 30.72 |
| EES05709 | Sorghum | nucleus | 33.54 | 30.59 |
| Zm00001d017649_P001 | Maize | plastid | 31.37 | 30.51 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 29.81 | 29.91 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 32.61 | 29.75 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 31.99 | 29.6 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 29.81 | 29.45 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 29.5 | 29.32 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 30.12 | 28.87 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 29.19 | 28.66 |
| CDY37958 | Canola | cytosol, plastid | 28.57 | 27.14 |
| CDX93396 | Canola | cytosol | 28.26 | 27.08 |
| CDX94520 | Canola | cytosol | 19.57 | 26.92 |
| CDY21311 | Canola | cytosol | 19.57 | 26.92 |
| CDY09318 | Canola | cytosol | 19.57 | 26.92 |
| CDY07541 | Canola | cytosol | 19.57 | 26.92 |
| CDY52651 | Canola | cytosol | 18.01 | 26.24 |
| CDY17103 | Canola | cytosol | 23.91 | 26.01 |
| CDY24542 | Canola | nucleus | 26.4 | 25.99 |
| CDY20611 | Canola | nucleus | 27.33 | 25.81 |
| CDY20963 | Canola | nucleus | 27.02 | 25.74 |
| CDX72513 | Canola | cytosol | 18.63 | 25.64 |
| CDY40647 | Canola | cytosol | 18.63 | 25.53 |
| CDY06767 | Canola | cytosol | 23.91 | 25.33 |
| CDX69109 | Canola | nucleus | 15.84 | 24.88 |
| CDX73168 | Canola | cytosol | 18.94 | 24.3 |
| CDY15019 | Canola | cytosol | 18.94 | 24.3 |
| CDX76311 | Canola | cytosol | 18.94 | 24.11 |
| CDY01615 | Canola | cytosol | 22.67 | 23.93 |
| CDY71607 | Canola | cytosol | 22.67 | 23.86 |
| CDY40841 | Canola | cytosol | 22.05 | 23.75 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 18.63 | 23.72 |
| CDY26402 | Canola | cytosol | 21.74 | 23.65 |
| CDY51918 | Canola | cytosol | 20.81 | 23.34 |
| CDY17048 | Canola | cytosol | 22.36 | 23.15 |
| CDX88507 | Canola | nucleus | 21.12 | 22.82 |
| CDX87407 | Canola | nucleus | 22.36 | 22.78 |
| CDX79294 | Canola | nucleus | 20.81 | 22.04 |
| CDY43390 | Canola | cytosol | 22.05 | 21.85 |
| CDY24237 | Canola | nucleus | 21.43 | 21.3 |
| CDY13070 | Canola | cytosol | 17.39 | 20.07 |
| CDX82568 | Canola | nucleus | 21.12 | 20.0 |
| CDY64561 | Canola | nucleus | 21.12 | 20.0 |
| CDY71192 | Canola | cytosol | 17.39 | 20.0 |
| CDY46345 | Canola | cytosol | 17.08 | 19.5 |
| CDY18062 | Canola | cytosol | 16.46 | 18.79 |
| CDY23552 | Canola | cytosol | 9.32 | 13.82 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.2 | GO:A0A078EQ11 |
| EnsemblPlants:CDY03162 | ProteinID:CDY03162 | ProteinID:CDY03162.1 | ncoils:Coil | InterPro:E3ligase_BOI_like | EnsemblPlantsGene:GSBRNA2T00115605001 |
| InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PIRSF:PIRSF036836 | PFscan:PS50089 | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF13 | UniPathway:UPA00144 | UniParc:UPI0004EEE496 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC09g19940D
Coordinates
chrLK031941:-:17660..26823
Molecular Weight (calculated)
35923.7 Da
IEP (calculated)
7.646
GRAVY (calculated)
-0.465
Length
322 amino acids
Sequence
(BLAST)
(BLAST)
001: MALQAHHHPS TMFFLNRNGQ EGIYVYVFIC SIFRCLRNGQ EGIDFSPELQ KSQLPSITAG VDKRKRARED YSVIDLETTA APMNPPPCTP PQFISSRQTL
101: NVVSTGLRLS QGQSQSIEQR SSSSPMIDGN FAGEINGQAD ELDRFLQTQG EQLRCMLADT GERHYRELLR TREESVRRRL REKEAEIERA TRRHAELEAR
201: AAQIEKEARA WQVRAAAKEA EAMSLQARLQ QVVAHGGGVT AAEPKLKSVD GVDEAGDAES VYVDPDRFES NGPSCRICRR RAATVLALPC RHLILCKGCD
301: GSVRVCPLCL SLKNSSVEVF FF
101: NVVSTGLRLS QGQSQSIEQR SSSSPMIDGN FAGEINGQAD ELDRFLQTQG EQLRCMLADT GERHYRELLR TREESVRRRL REKEAEIERA TRRHAELEAR
201: AAQIEKEARA WQVRAAAKEA EAMSLQARLQ QVVAHGGGVT AAEPKLKSVD GVDEAGDAES VYVDPDRFES NGPSCRICRR RAATVLALPC RHLILCKGCD
301: GSVRVCPLCL SLKNSSVEVF FF
001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.