Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018428.1-P | Field mustard | nucleus | 97.07 | 97.93 |
| CDY20963 | Canola | nucleus | 96.77 | 97.63 |
| AT1G10650.1 | Thale cress | nucleus | 83.87 | 84.37 |
| CDX93396 | Canola | cytosol | 82.11 | 83.33 |
| CDY37958 | Canola | cytosol, plastid | 82.4 | 82.89 |
| CDY34127 | Canola | extracellular | 12.9 | 73.33 |
| CDY24542 | Canola | nucleus | 65.1 | 67.89 |
| KRH69583 | Soybean | nucleus | 53.37 | 54.01 |
| KRH74575 | Soybean | cytosol | 52.79 | 53.41 |
| PGSC0003DMT400035059 | Potato | nucleus | 50.73 | 52.11 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 53.37 | 51.56 |
| Solyc05g005210.2.1 | Tomato | nucleus | 49.27 | 50.3 |
| TraesCSU01G113400.1 | Wheat | nucleus | 36.07 | 35.04 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 35.19 | 34.19 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 34.6 | 33.81 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 35.78 | 33.42 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 33.43 | 33.24 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 35.48 | 32.79 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 33.72 | 32.3 |
| CDY17103 | Canola | cytosol | 27.86 | 32.09 |
| CDY06767 | Canola | cytosol | 27.86 | 31.25 |
| CDY33511 | Canola | nucleus | 26.39 | 29.7 |
| CDX77733 | Canola | nucleus | 26.1 | 29.67 |
| CDY43447 | Canola | nucleus | 25.81 | 29.14 |
| CDY40841 | Canola | cytosol | 25.51 | 29.1 |
| CDY37172 | Canola | cytosol | 25.22 | 28.48 |
| CDY17048 | Canola | cytosol | 25.81 | 28.3 |
| CDY51856 | Canola | cytosol | 24.93 | 28.05 |
| CDY09318 | Canola | cytosol | 19.06 | 27.78 |
| CDY21311 | Canola | cytosol | 19.06 | 27.78 |
| CDX94520 | Canola | cytosol | 19.06 | 27.78 |
| CDY07541 | Canola | cytosol | 19.06 | 27.78 |
| CDY09609 | Canola | cytosol | 19.94 | 27.53 |
| CDY03162 | Canola | cytosol | 25.81 | 27.33 |
| CDX90458 | Canola | cytosol | 22.29 | 25.0 |
| CDY71607 | Canola | cytosol | 21.7 | 24.18 |
| CDY51918 | Canola | cytosol | 20.23 | 24.04 |
| CDY01615 | Canola | cytosol | 21.41 | 23.93 |
| CDX88507 | Canola | nucleus | 20.53 | 23.49 |
| CDY26402 | Canola | cytosol | 19.65 | 22.64 |
| CDY52651 | Canola | cytosol | 14.66 | 22.62 |
| CDX87407 | Canola | nucleus | 20.82 | 22.47 |
| CDX69109 | Canola | nucleus | 13.49 | 22.44 |
| CDY71192 | Canola | cytosol | 18.18 | 22.14 |
| CDX79294 | Canola | nucleus | 19.65 | 22.04 |
| CDY24237 | Canola | nucleus | 20.82 | 21.91 |
| CDY64561 | Canola | nucleus | 21.7 | 21.76 |
| CDY46345 | Canola | cytosol | 17.89 | 21.63 |
| CDY18062 | Canola | cytosol | 17.89 | 21.63 |
| CDY43390 | Canola | cytosol | 20.53 | 21.54 |
| CDY13070 | Canola | cytosol | 17.6 | 21.51 |
| CDX72513 | Canola | cytosol | 14.66 | 21.37 |
| CDY40647 | Canola | cytosol | 14.66 | 21.28 |
| CDX82568 | Canola | nucleus | 21.11 | 21.18 |
| CDY15019 | Canola | cytosol | 15.54 | 21.12 |
| CDX73168 | Canola | cytosol | 15.54 | 21.12 |
| CDX76311 | Canola | cytosol | 15.54 | 20.95 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 15.25 | 20.55 |
| CDY23552 | Canola | cytosol | 9.97 | 15.67 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078G596 |
| UniProt:A0A078G596 | EnsemblPlants:CDY20611 | ProteinID:CDY20611 | ProteinID:CDY20611.1 | ncoils:Coil | InterPro:E3ligase_BOI_like |
| EnsemblPlantsGene:GSBRNA2T00012785001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PIRSF:PIRSF036836 | PFscan:PS50089 |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF8 | UniPathway:UPA00144 | UniParc:UPI0004EBF3D0 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC08g14470DBnaC08g14470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G596]
Coordinates
chrLK032110:+:239831..241858
Molecular Weight (calculated)
38372.2 Da
IEP (calculated)
7.542
GRAVY (calculated)
-0.707
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRGNNGYTV PPVFMNENHL QYQTNTQTNQ LHFLGTMGGG CTVDPVNYFA NDNHAPMLRP NKRGREAESI SHNIQRQHKL QMSLNYNHNN ISVQEEAPKE
101: NLVSTGLRLS YDDDERNSSV TSASGSIVAA ASPILQSLDD TLRIDLHRQK DELDQFLKIQ AAQMAKEVRD MKQRQIASFL NTIEKGVSKK LQEKDQEIDI
201: MNKKNKELVE RIKQVATEAQ NWHYRAKYNE SVVNALKTSL QQAMSHNNNN NNNVVAGADH CKEGFGDSEI DDAASSYIDP NNSNNNMGSQ RMRCKMCHGK
301: EVSVLVVPCR HLSLCKECDV FTGFCPVCKS LKTSSVQVFF S
101: NLVSTGLRLS YDDDERNSSV TSASGSIVAA ASPILQSLDD TLRIDLHRQK DELDQFLKIQ AAQMAKEVRD MKQRQIASFL NTIEKGVSKK LQEKDQEIDI
201: MNKKNKELVE RIKQVATEAQ NWHYRAKYNE SVVNALKTSL QQAMSHNNNN NNNVVAGADH CKEGFGDSEI DDAASSYIDP NNSNNNMGSQ RMRCKMCHGK
301: EVSVLVVPCR HLSLCKECDV FTGFCPVCKS LKTSSVQVFF S
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
Arabidopsis Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.