Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 91.17 | 91.69 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 91.17 | 91.17 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 92.31 | 87.8 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 62.11 | 63.56 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 62.68 | 60.27 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 55.27 | 54.49 |
| CDY34127 | Canola | extracellular | 7.41 | 43.33 |
| KRH69583 | Soybean | nucleus | 39.6 | 41.25 |
| KRH74575 | Soybean | cytosol | 39.6 | 41.25 |
| PGSC0003DMT400035059 | Potato | nucleus | 38.46 | 40.66 |
| Solyc05g005210.2.1 | Tomato | nucleus | 37.32 | 39.22 |
| Bra019910.1-P | Field mustard | nucleus, plastid | 33.62 | 38.82 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 38.46 | 38.24 |
| AT1G10650.1 | Thale cress | nucleus | 35.61 | 36.87 |
| CDX93396 | Canola | cytosol | 35.04 | 36.61 |
| CDY37958 | Canola | cytosol, plastid | 35.04 | 36.28 |
| CDY20611 | Canola | nucleus | 35.04 | 36.07 |
| CDY20963 | Canola | nucleus | 34.47 | 35.8 |
| Bra018428.1-P | Field mustard | nucleus | 34.47 | 35.8 |
| CDY24542 | Canola | nucleus | 33.33 | 35.78 |
| Bra031495.1-P | Field mustard | nucleus | 33.33 | 35.78 |
| AT1G60610.4 | Thale cress | nucleus | 33.9 | 35.0 |
Protein Annotations
| EnsemblPlants:TraesCSU01G113400.1 | EnsemblPlantsGene:TraesCSU01G113400 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF9 | PFAM:PF13920 |
| PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrUn:+:97468710..97471455
Molecular Weight (calculated)
37704.4 Da
IEP (calculated)
6.750
GRAVY (calculated)
-0.413
Length
351 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGHMFGGGN WGSSPYPGSI ANPNISANEN QFLFDAKAAP QQLQLFGSNA VGTSGYYNYN GNGNPYVMNQ PRKASNCAAD EKKLKLQMSL NNFHAGDADR
101: LACTGNSSVV STGLKLSYED NEHNSSFTSG SGSMSSLTST TPFGHDIMTE MEKGNKEIDY YLRSQVEQLS KRVKEMKQGQ MVSLVATLER GVGKKLREKE
201: LEVEAMNRKS QELNEQIRQV AMQVQSWQSA ALYNESVAST LKTQLMQVVA DHANRTREGC GDSEIESAAA SGQKNINAAS GGFFQSSLLP GVKSCVAAGG
301: LAACRLCGAK EAAVLVMPCR HLCLCADCDR VADACPVCQY PKSGSVEINL S
101: LACTGNSSVV STGLKLSYED NEHNSSFTSG SGSMSSLTST TPFGHDIMTE MEKGNKEIDY YLRSQVEQLS KRVKEMKQGQ MVSLVATLER GVGKKLREKE
201: LEVEAMNRKS QELNEQIRQV AMQVQSWQSA ALYNESVAST LKTQLMQVVA DHANRTREGC GDSEIESAAA SGQKNINAAS GGFFQSSLLP GVKSCVAAGG
301: LAACRLCGAK EAAVLVMPCR HLCLCADCDR VADACPVCQY PKSGSVEINL S
001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
Arabidopsis Description
At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.