CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018428.1-P	Field mustard	nucleus	99.7	99.7
CDY20611	Canola	nucleus	97.63	96.77
AT1G10650.1	Thale cress	nucleus	83.14	82.89
CDX93396	Canola	cytosol	80.47	80.95
CDY37958	Canola	cytosol, plastid	80.77	80.53
CDY34127	Canola	extracellular	12.72	71.67
CDY24542	Canola	nucleus	64.5	66.67
KRH69583	Soybean	nucleus	53.55	53.71
KRH74575	Soybean	cytosol	52.96	53.12
PGSC0003DMT400035059	Potato	nucleus	51.48	52.41
VIT_01s0127g00360.t01	Wine grape	nucleus	53.85	51.56
Solyc05g005210.2.1	Tomato	nucleus	50.0	50.6
TraesCSU01G113400.1	Wheat	nucleus	35.8	34.47
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	34.91	33.62
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	34.32	33.24
Os02t0130300-02	Rice	cytosol, nucleus, plastid	33.73	33.24
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	35.8	33.15
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	35.21	32.25
CDY17103	Canola	cytosol	28.11	32.09
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	33.43	31.74
CDY06767	Canola	cytosol	28.11	31.25
CDY33511	Canola	nucleus	26.33	29.37
CDX77733	Canola	nucleus	26.04	29.33
CDY43447	Canola	nucleus	25.74	28.81
CDY40841	Canola	cytosol	25.15	28.43
CDY37172	Canola	cytosol	25.15	28.15
CDY51856	Canola	cytosol	24.85	27.72
CDY17048	Canola	cytosol	25.44	27.65
CDX94520	Canola	cytosol	18.93	27.35
CDY09318	Canola	cytosol	18.93	27.35
CDY21311	Canola	cytosol	18.93	27.35
CDY07541	Canola	cytosol	18.93	27.35
CDY03162	Canola	cytosol	25.74	27.02
CDY09609	Canola	cytosol	19.53	26.72
CDX90458	Canola	cytosol	21.89	24.34
CDY71607	Canola	cytosol	21.6	23.86
CDY51918	Canola	cytosol	20.12	23.69
CDY01615	Canola	cytosol	21.3	23.61
CDX88507	Canola	nucleus	20.41	23.15
CDY26402	Canola	cytosol	19.82	22.64
CDX87407	Canola	nucleus	21.01	22.47
CDY71192	Canola	cytosol	18.34	22.14
CDX79294	Canola	nucleus	19.82	22.04
CDY64561	Canola	nucleus	21.89	21.76
CDY52651	Canola	cytosol	14.2	21.72
CDY46345	Canola	cytosol	18.05	21.63
CDY18062	Canola	cytosol	18.05	21.63
CDY24237	Canola	nucleus	20.71	21.6
CDY13070	Canola	cytosol	17.75	21.51
CDX69109	Canola	nucleus	13.02	21.46
CDY43390	Canola	cytosol	20.41	21.23
CDX82568	Canola	nucleus	21.3	21.18
CDX72513	Canola	cytosol	14.2	20.51
CDY40647	Canola	cytosol	14.2	20.43
CDX73168	Canola	cytosol	15.09	20.32
CDY15019	Canola	cytosol	15.09	20.32
CDX76311	Canola	cytosol	15.09	20.16
CDY17506	Canola	cytosol, nucleus, plastid	14.79	19.76
CDY23552	Canola	cytosol	9.76	15.21

Protein Annotations

KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078G8H1
UniProt:A0A078G8H1	EnsemblPlants:CDY20963	ProteinID:CDY20963	ProteinID:CDY20963.1	ncoils:Coil	InterPro:E3ligase_BOI_like
EnsemblPlantsGene:GSBRNA2T00015110001	InterPro:IPR001841	InterPro:IPR013083	PFAM:PF13920	PIRSF:PIRSF036836	PFscan:PS50089
PANTHER:PTHR42647	PANTHER:PTHR42647:SF8	UniPathway:UPA00144	UniParc:UPI0004EEA9A9	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD

Description

BnaA08g25620DBnaA08g25620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8H1]

Coordinates

chrLK032115:-:94792..96743

Molecular Weight (calculated)

38056.9 Da

IEP (calculated)

7.522

GRAVY (calculated)

-0.674

Length

338 amino acids

Sequence
(BLAST)

001: MSRGNNGYTV PPVFMNENHL QYQTNAQTNQ LHFLGTMGGR CTVDPVNYFA NDNHAPMLRP NKRGREAESI SHNVQRQQKL QMSLNYNHNN ISVQEEAPKE
101: NLVSTGLRLS YDDDERNSSV TSASGSIVAA APPILQSLDD TLRIDLHRQK DELEQFLKIQ AAQMAKEVRD MKQRQIASFL NTIEKGVSKK LQEKDQEIDI
201: MNKTNKELVE RIKQVATEAQ NWHYRAKYNE SVVNALKTSL QQAMSHNNNN VVAGADHCKE GFGDSEIDDA ASSYIDPNNS NNNMGSQRMR CKMCHGKEVS
301: VLVVPCRHLS LCKECDVFTG FCPVCKSLKT ASVQVFFS

Best Arabidopsis Sequence Match ( AT1G10650.1 )
(BLAST)

001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.