Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 75.28 | 73.42 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 57.02 | 59.18 |
| TraesCSU01G113400.1 | Wheat | nucleus | 54.49 | 55.27 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 53.09 | 54.15 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 52.53 | 53.28 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 53.37 | 51.49 |
| CDY34127 | Canola | extracellular | 7.02 | 41.67 |
| KRH69583 | Soybean | nucleus | 37.08 | 39.17 |
| KRH74575 | Soybean | cytosol | 36.8 | 38.87 |
| PGSC0003DMT400035059 | Potato | nucleus | 34.83 | 37.35 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 36.24 | 36.54 |
| Solyc05g005210.2.1 | Tomato | nucleus | 33.71 | 35.93 |
| Bra019910.1-P | Field mustard | nucleus, plastid | 30.62 | 35.86 |
| CDY24542 | Canola | nucleus | 32.58 | 35.47 |
| Bra031495.1-P | Field mustard | nucleus | 32.58 | 35.47 |
| CDY37958 | Canola | cytosol, plastid | 33.71 | 35.4 |
| AT1G10650.1 | Thale cress | nucleus | 33.43 | 35.1 |
| CDX93396 | Canola | cytosol | 32.87 | 34.82 |
| AT1G60610.4 | Thale cress | nucleus | 33.15 | 34.71 |
| CDY20611 | Canola | nucleus | 32.3 | 33.72 |
| Bra018428.1-P | Field mustard | nucleus | 31.74 | 33.43 |
| CDY20963 | Canola | nucleus | 31.74 | 33.43 |
| Zm00001d010503_P001 | Maize | cytosol, mitochondrion | 9.83 | 27.13 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 24.72 | 26.75 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 24.44 | 25.82 |
| Zm00001d026161_P001 | Maize | cytosol | 9.83 | 24.82 |
| Zm00001d004743_P001 | Maize | plastid | 11.24 | 24.24 |
| Zm00001d003852_P001 | Maize | cytosol, nucleus, plastid | 21.35 | 23.03 |
| Zm00001d052640_P001 | Maize | cytosol, extracellular, nucleus | 19.1 | 22.97 |
| Zm00001d025310_P001 | Maize | cytosol | 20.51 | 22.74 |
| Zm00001d025319_P001 | Maize | cytosol | 19.66 | 22.65 |
| Zm00001d003850_P001 | Maize | extracellular | 21.07 | 22.46 |
| Zm00001d017649_P001 | Maize | plastid | 20.79 | 22.36 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 21.07 | 21.25 |
| Zm00001d016648_P001 | Maize | cytosol | 17.98 | 20.65 |
| Zm00001d047069_P001 | Maize | cytosol | 17.98 | 19.28 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 17.98 | 19.05 |
| Zm00001d052639_P001 | Maize | extracellular | 17.42 | 18.34 |
| Zm00001d013571_P001 | Maize | cytosol, nucleus, plastid | 15.45 | 16.67 |
| Zm00001d033419_P001 | Maize | plastid | 10.96 | 13.93 |
| Zm00001d003613_P002 | Maize | nucleus | 13.76 | 11.29 |
Protein Annotations
| EMBL:BT040274 | EMBL:BT065688 | EnsemblPlants:Zm00001d015130_P001 | EnsemblPlants:Zm00001d015130_T001 | EnsemblPlantsGene:Zm00001d015130 | EntrezGene:100273128 |
| Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF9 | PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:AQK68131.1 |
| SEG:seg | UniParc:UPI00017B7F81 | UniProt:B4FT36 | MapMan:35.1 | : | : |
Description
SBP (S-ribonuclease binding protein) family protein
Coordinates
chr5:-:76651760..76654786
Molecular Weight (calculated)
38087.1 Da
IEP (calculated)
6.274
GRAVY (calculated)
-0.335
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEAIRMGG GNLAPAYLSG AATATAITMQ DPNQNQNQNQ NQNQSQFLFS ANSTALQLFG SAAVPTVGPA GYINYTGNTH LPVMNQASTS NIGAGNENLL
101: KLQVPLSDYH QQSAGRLARV GNPGAVSTGL RLSYEDDERN SSITSGSGSM ASLPATMSCV DGFMAELDKE SKEINFYLRL QADQICKRMK EANQRWMVSF
201: LASVNQAVGK KLRDKELEVE AVNRKSKELN EQMRQVAMEV QSWQSAAMYN QSVVNTLKNK LMQLVAQNTN LAREGMGDSE DVASSQSPDA GGDALGGLRG
301: TATVGLGACR CCGRKEASVL VMACRHLCLC ADCDKVSDVC PVCRFPKSGS VEINMS
101: KLQVPLSDYH QQSAGRLARV GNPGAVSTGL RLSYEDDERN SSITSGSGSM ASLPATMSCV DGFMAELDKE SKEINFYLRL QADQICKRMK EANQRWMVSF
201: LASVNQAVGK KLRDKELEVE AVNRKSKELN EQMRQVAMEV QSWQSAAMYN QSVVNTLKNK LMQLVAQNTN LAREGMGDSE DVASSQSPDA GGDALGGLRG
301: TATVGLGACR CCGRKEASVL VMACRHLCLC ADCDKVSDVC PVCRFPKSGS VEINMS
001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
Arabidopsis Description
At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.