Factsheet for Solyc05g005210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400035059	Potato	nucleus	96.11	96.69
KRH69583	Soybean	nucleus	59.88	59.35
KRH74575	Soybean	cytosol	58.08	57.57
VIT_01s0127g00360.t01	Wine grape	nucleus	59.88	56.66
AT1G10650.1	Thale cress	nucleus	52.4	51.62
CDX93396	Canola	cytosol	50.6	50.3
CDY37958	Canola	cytosol, plastid	50.9	50.15
AT1G60610.4	Thale cress	nucleus	50.9	50.0
CDY20963	Canola	nucleus	50.6	50.0
Bra019910.1-P	Field mustard	nucleus, plastid	45.51	50.0
Bra018428.1-P	Field mustard	nucleus	50.3	49.7
Bra031495.1-P	Field mustard	nucleus	48.5	49.54
CDY24542	Canola	nucleus	48.5	49.54
CDY20611	Canola	nucleus	50.3	49.27
Solyc03g112860.2.1	Tomato	nucleus, plastid	37.43	38.7
TraesCSU01G113400.1	Wheat	nucleus	39.22	37.32
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	38.32	36.47
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	37.72	36.1
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	38.32	34.69
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	37.43	34.25
Os02t0130300-02	Rice	cytosol, nucleus, plastid	34.73	33.82
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	35.93	33.71
Solyc04g078760.2.1	Tomato	nucleus	32.34	31.95
Solyc08g007120.2.1	Tomato	nucleus	28.44	28.7
Solyc08g077460.2.1	Tomato	nucleus	28.74	27.59
Solyc06g061020.2.1	Tomato	nucleus	26.95	27.19
Solyc01g111610.2.1	Tomato	cytosol	16.47	22.63
Solyc10g055560.1.1	Tomato	nucleus	16.77	20.74
Solyc02g031710.2.1	Tomato	nucleus	19.16	20.65
Solyc02g069180.2.1	Tomato	plastid	14.07	16.61

Protein Annotations

EnsemblPlants:Solyc05g005210.2.1	EnsemblPlantsGene:Solyc05g005210.2	Gene3D:3.30.40.10	InterPro:E3ligase_BOI_like	InterPro:IPR001841	InterPro:IPR013083
InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR42647	PANTHER:PTHR42647:SF8	PFAM:PF13920
PFscan:PS50089	PIRSF:PIRSF036836	SEG:seg	UniParc:UPI0002766C3B	UniProt:K4BW52	MapMan:35.1

Description

No Description!

Coordinates

chr5:-:179199..183983

Molecular Weight (calculated)

36950.8 Da

IEP (calculated)

6.751

GRAVY (calculated)

-0.538

Length

334 amino acids

Sequence
(BLAST)

001: MYRGNGNGTN TQLPIFVDAN GFQYPPSAPN QLQLFGSLPL GSSADPVNYF VNEHATPMIR HNRGSEAGVS RQQKLQFSLN HNLVHDDTER PANVPAQNPV
101: STGLKLSYDD DEPNSSLSSA SGSINASASV IMSLGDNIKT EMERQKKEFD QYLKTQEETW ARGVRDIKQR HMASLLSAVE KNVGTKLQEK DIELENINQK
201: NRELVERMKQ VTAEAQNWCY RAKCNESLVN TLKTNLQQAM QSAEQGKEGM GDNELDDAAS YIDRNNRLSN IPSGSGKCAS TKKGIICKVC KLKEVCILLM
301: PCRHLCLCKD CEGLVSVCPI CQLMTTASVE VFLS

Best Arabidopsis Sequence Match ( AT1G10650.1 )
(BLAST)

001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS

Arabidopsis Description

Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.