Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- cytosol 2
- mitochondrion 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019910.1-P | Field mustard | nucleus, plastid | 87.02 | 97.04 |
| CDX93396 | Canola | cytosol | 95.28 | 96.13 |
| CDY20611 | Canola | nucleus | 82.89 | 82.4 |
| AT1G10650.1 | Thale cress | nucleus | 82.3 | 82.3 |
| CDY20963 | Canola | nucleus | 80.53 | 80.77 |
| CDY34127 | Canola | extracellular | 13.57 | 76.67 |
| CDY24542 | Canola | nucleus | 64.31 | 66.67 |
| KRH69583 | Soybean | nucleus | 54.57 | 54.9 |
| KRH74575 | Soybean | cytosol | 53.98 | 54.3 |
| PGSC0003DMT400035059 | Potato | nucleus | 51.62 | 52.71 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 53.1 | 50.99 |
| Solyc05g005210.2.1 | Tomato | nucleus | 50.15 | 50.9 |
| TraesCSU01G113400.1 | Wheat | nucleus | 36.28 | 35.04 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 35.1 | 34.1 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 35.4 | 33.71 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 33.63 | 33.24 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 35.69 | 33.15 |
| CDY17103 | Canola | cytosol | 28.91 | 33.11 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 35.99 | 33.06 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 34.22 | 33.05 |
| CDY06767 | Canola | cytosol | 28.91 | 32.24 |
| CDY33511 | Canola | nucleus | 28.02 | 31.35 |
| CDX77733 | Canola | nucleus | 27.73 | 31.33 |
| CDY43447 | Canola | nucleus | 27.14 | 30.46 |
| CDY40841 | Canola | cytosol | 26.84 | 30.43 |
| CDY17048 | Canola | cytosol | 27.43 | 29.9 |
| CDY37172 | Canola | cytosol | 26.55 | 29.8 |
| CDY09609 | Canola | cytosol | 21.53 | 29.55 |
| CDY51856 | Canola | cytosol | 26.25 | 29.37 |
| CDY03162 | Canola | cytosol | 27.14 | 28.57 |
| CDY07541 | Canola | cytosol | 18.58 | 26.92 |
| CDX94520 | Canola | cytosol | 18.58 | 26.92 |
| CDY21311 | Canola | cytosol | 18.58 | 26.92 |
| CDY09318 | Canola | cytosol | 18.58 | 26.92 |
| CDX90458 | Canola | cytosol | 23.89 | 26.64 |
| CDY51918 | Canola | cytosol | 20.65 | 24.39 |
| CDY71607 | Canola | cytosol | 21.24 | 23.53 |
| CDY26402 | Canola | cytosol | 20.35 | 23.31 |
| CDY01615 | Canola | cytosol | 20.94 | 23.28 |
| CDY24237 | Canola | nucleus | 22.12 | 23.15 |
| CDY52651 | Canola | cytosol | 15.04 | 23.08 |
| CDY43390 | Canola | cytosol | 21.83 | 22.77 |
| CDX79294 | Canola | nucleus | 20.35 | 22.7 |
| CDX88507 | Canola | nucleus | 19.76 | 22.48 |
| CDX69109 | Canola | nucleus | 13.57 | 22.44 |
| CDX87407 | Canola | nucleus | 20.65 | 22.15 |
| CDY64561 | Canola | nucleus | 22.12 | 22.06 |
| CDX82568 | Canola | nucleus | 21.53 | 21.47 |
| CDY71192 | Canola | cytosol | 17.7 | 21.43 |
| CDY40647 | Canola | cytosol | 14.75 | 21.28 |
| CDY13070 | Canola | cytosol | 17.4 | 21.15 |
| CDX72513 | Canola | cytosol | 14.45 | 20.94 |
| CDY15019 | Canola | cytosol | 15.34 | 20.72 |
| CDX73168 | Canola | cytosol | 15.34 | 20.72 |
| CDX76311 | Canola | cytosol | 15.34 | 20.55 |
| CDY18062 | Canola | cytosol | 16.81 | 20.21 |
| CDY46345 | Canola | cytosol | 16.81 | 20.21 |
| CDY17506 | Canola | cytosol, nucleus, plastid | 15.04 | 20.16 |
| CDY23552 | Canola | cytosol | 9.73 | 15.21 |
Protein Annotations
| KEGG:00220+6.3.2.- | KEGG:00261+6.3.2.- | KEGG:00380+6.3.2.- | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078HM93 |
| UniProt:A0A078HM93 | EnsemblPlants:CDY37958 | ProteinID:CDY37958 | ProteinID:CDY37958.1 | ncoils:Coil | InterPro:E3ligase_BOI_like |
| EnsemblPlantsGene:GSBRNA2T00064991001 | InterPro:IPR001841 | InterPro:IPR013083 | PFAM:PF13920 | PIRSF:PIRSF036836 | PFscan:PS50089 |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF8 | UniPathway:UPA00144 | UniParc:UPI0004EDC4A6 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC05g08160DBnaC05g08160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HM93]
Coordinates
chrLK032413:+:29790..32069
Molecular Weight (calculated)
38204.0 Da
IEP (calculated)
8.395
GRAVY (calculated)
-0.751
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSGNNGNTA PQVFMNENQL QYHTNTQSNQ LHLLGTMGGG GCTTVNPVNY FANDNLVPMV RPNKRGREAE SISNNNNIQR QHQLQMSLNY NHNNYNAQEE
101: VPKENLVSTG LRLSYDDEER NSSVTSASGS IVAASPFSQS LDDSLRIHLH RQKDELDQFL KFQAAQMAKG VRDIKQRQIA SLLNTVEQGV SRKLQEKDQE
201: IEIMNRKNKE LVERIKQVTT EAQNWHHRAK YNESVVIALK NNLQQAMSHN NNKKVTADQG KEGFGDSEID DAASSYIDPN NNKKMGNQRM RCRMCNAKEV
301: SVLLVPCRHL SLCKECDVFT GVCPVCKSLK TSSVQVFFS
101: VPKENLVSTG LRLSYDDEER NSSVTSASGS IVAASPFSQS LDDSLRIHLH RQKDELDQFL KFQAAQMAKG VRDIKQRQIA SLLNTVEQGV SRKLQEKDQE
201: IEIMNRKNKE LVERIKQVTT EAQNWHHRAK YNESVVIALK NNLQQAMSHN NNKKVTADQG KEGFGDSEID DAASSYIDPN NNKKMGNQRM RCRMCNAKEV
301: SVLLVPCRHL SLCKECDVFT GVCPVCKSLK TSSVQVFFS
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
Arabidopsis Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.