Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY20611 | Canola | nucleus | 84.37 | 83.87 |
| Bra018428.1-P | Field mustard | nucleus | 83.19 | 83.43 |
| CDY20963 | Canola | nucleus | 82.89 | 83.14 |
| CDY37958 | Canola | cytosol, plastid | 82.3 | 82.3 |
| Bra019910.1-P | Field mustard | nucleus, plastid | 73.45 | 81.91 |
| CDX93396 | Canola | cytosol | 80.83 | 81.55 |
| AT1G60610.4 | Thale cress | nucleus | 70.5 | 70.29 |
| KRH69583 | Soybean | nucleus | 56.93 | 57.27 |
| KRH74575 | Soybean | cytosol | 56.05 | 56.38 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 56.93 | 54.67 |
| PGSC0003DMT400035059 | Potato | nucleus | 52.8 | 53.92 |
| Solyc05g005210.2.1 | Tomato | nucleus | 51.62 | 52.4 |
| TraesCSU01G113400.1 | Wheat | nucleus | 36.87 | 35.61 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 37.76 | 35.07 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 35.1 | 34.69 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 35.69 | 34.47 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 35.1 | 34.1 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 35.1 | 33.43 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 35.99 | 33.06 |
| AT1G45976.1 | Thale cress | cytosol | 27.43 | 28.62 |
| AT5G47050.1 | Thale cress | nucleus | 24.48 | 27.67 |
| AT1G32740.1 | Thale cress | nucleus | 24.78 | 26.92 |
| AT4G17680.1 | Thale cress | nucleus | 23.6 | 25.48 |
| AT5G45100.1 | Thale cress | cytosol | 19.76 | 22.79 |
| AT4G19700.1 | Thale cress | cytosol | 19.76 | 22.04 |
| AT4G35070.1 | Thale cress | cytosol | 16.81 | 21.51 |
| AT3G12920.1 | Thale cress | nucleus | 20.94 | 21.19 |
| AT1G79110.1 | Thale cress | nucleus | 19.76 | 18.72 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:837608 | UniProt:A0A178WAA1 | ProteinID:AEE28613.1 | ArrayExpress:AT1G10650 |
| EnsemblPlantsGene:AT1G10650 | RefSeq:AT1G10650 | TAIR:AT1G10650 | RefSeq:AT1G10650-TAIR-G | EnsemblPlants:AT1G10650.1 | TAIR:AT1G10650.1 |
| Unigene:At.43660 | EMBL:BT002880 | EMBL:BT004404 | ncoils:Coil | EMBL:DQ059088 | InterPro:E3ligase_BOI_like |
| InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_172535.1 | ProteinID:OAP15288.1 | PIRSF:PIRSF036836 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF8 |
| UniProt:Q84JF9 | UniParc:UPI000000BE16 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
Coordinates
chr1:-:3523986..3526531
Molecular Weight (calculated)
38251.4 Da
IEP (calculated)
7.963
GRAVY (calculated)
-0.630
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.