Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06767 | Canola | cytosol | 80.62 | 86.18 |
| Bra040255.1-P | Field mustard | nucleus | 60.62 | 86.03 |
| CDY17103 | Canola | cytosol | 77.23 | 84.8 |
| CDY40841 | Canola | cytosol | 74.77 | 81.27 |
| CDY17048 | Canola | cytosol | 76.31 | 79.74 |
| Bra014051.1-P | Field mustard | nucleus | 75.69 | 79.1 |
| KRH05668 | Soybean | nucleus | 65.54 | 62.28 |
| KRH15376 | Soybean | nucleus, plastid | 65.23 | 60.4 |
| Solyc04g078760.2.1 | Tomato | nucleus | 62.15 | 59.76 |
| VIT_18s0001g10370.t01 | Wine grape | nucleus | 59.69 | 59.15 |
| PGSC0003DMT400020551 | Potato | nucleus | 62.15 | 54.01 |
| GSMUA_Achr10P... | Banana | nucleus | 52.0 | 53.14 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 51.38 | 48.13 |
| GSMUA_Achr11P... | Banana | nucleus | 53.23 | 46.26 |
| Os03t0263800-01 | Rice | nucleus, plastid | 48.0 | 45.61 |
| Zm00001d047856_P001 | Maize | nucleus, plastid | 46.15 | 45.59 |
| EER95135 | Sorghum | plastid | 47.08 | 45.4 |
| TraesCS4A01G089200.1 | Wheat | plastid | 46.77 | 44.84 |
| TraesCS4B01G215100.1 | Wheat | plastid | 46.77 | 44.84 |
| TraesCS4D01G215600.1 | Wheat | plastid | 46.77 | 44.84 |
| Zm00001d028532_P001 | Maize | nucleus, plastid | 46.15 | 44.51 |
| HORVU4Hr1G061210.1 | Barley | cytosol | 47.38 | 37.29 |
| AT1G10650.1 | Thale cress | nucleus | 28.62 | 27.43 |
| AT1G60610.4 | Thale cress | nucleus | 28.62 | 27.35 |
| AT1G32740.1 | Thale cress | nucleus | 23.38 | 24.36 |
| AT5G47050.1 | Thale cress | nucleus | 22.46 | 24.33 |
| AT4G17680.1 | Thale cress | nucleus | 22.46 | 23.25 |
| AT4G35070.1 | Thale cress | cytosol | 18.15 | 22.26 |
| AT3G12920.1 | Thale cress | nucleus | 21.23 | 20.6 |
| AT4G19700.1 | Thale cress | cytosol | 19.08 | 20.39 |
| AT1G79110.1 | Thale cress | nucleus | 22.15 | 20.11 |
| AT5G45100.1 | Thale cress | cytosol | 17.54 | 19.39 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:841106 | UniProt:A0A178WK23 | ProteinID:AAG50626.1 | ProteinID:AEE32123.1 |
| EMBL:AF324720 | EMBL:AF329502 | EMBL:AF349529 | EMBL:AK221737 | ArrayExpress:AT1G45976 | EnsemblPlantsGene:AT1G45976 |
| RefSeq:AT1G45976 | TAIR:AT1G45976 | RefSeq:AT1G45976-TAIR-G | EnsemblPlants:AT1G45976.1 | TAIR:AT1G45976.1 | EMBL:AY070470 |
| EMBL:AY093744 | Unigene:At.16918 | ncoils:Coil | InterPro:E3ligase_BOI_like | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_175141.1 | ProteinID:OAP17813.1 | PFAM:PF13920 | PIRSF:PIRSF036836 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PFscan:PS50089 | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF10 | UniProt:Q9FEA0 |
| Symbol:SBP1 | UniParc:UPI000009C657 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | : | : |
Description
SBP1SBP1 [Source:UniProtKB/TrEMBL;Acc:A0A178WK23]
Coordinates
chr1:+:17199314..17200841
Molecular Weight (calculated)
36860.7 Da
IEP (calculated)
4.967
GRAVY (calculated)
-0.653
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MALHPHLQDS KNFRDFCGID GQISPELGFN RSENLHDQSQ HPPYIPPFHV AGFAPGPVVQ IDGSDGGNGA DFEWNYGLGL EPRRERIKEQ DFLENNSQIS
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
101: SIDFLQARSV STGLGLSLDN ARVASSDGSA LLSLVGDDID RELQRQDADI DRFLKIQGDQ LRHAILDKIK RGQQKTVSLM EEKVVQKLRE KDEELERINR
201: KNKELEVRME QLTMEAEAWQ QRAKYNENMI AALNYNLDRA QGRPRDSIEG CGDSEVDDTA SCFNGRDNSN NNTKTMMMCR FCGVREMCML LLPCNHMCLC
301: KECERKLSSC PLCQSSKFLG MEVYM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.