Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09609 | Canola | cytosol | 57.96 | 73.68 |
| CDX90458 | Canola | cytosol | 69.75 | 72.04 |
| Bra012650.1-P | Field mustard | nucleus | 67.52 | 60.74 |
| AT5G47050.1 | Thale cress | nucleus | 55.73 | 58.33 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 47.13 | 43.92 |
| KRH77271 | Soybean | plastid | 44.9 | 43.79 |
| KRH28216 | Soybean | nucleus | 45.54 | 43.47 |
| Solyc06g061020.2.1 | Tomato | nucleus | 43.95 | 41.69 |
| AT1G32740.1 | Thale cress | nucleus | 40.76 | 41.03 |
| Solyc08g077460.2.1 | Tomato | nucleus | 45.22 | 40.8 |
| PGSC0003DMT400004642 | Potato | nucleus | 44.27 | 40.17 |
| PGSC0003DMT400068387 | Potato | nucleus | 43.31 | 39.77 |
| KRH04275 | Soybean | nucleus | 43.63 | 38.38 |
| Solyc08g007120.2.1 | Tomato | nucleus | 39.81 | 37.76 |
| KRH57556 | Soybean | nucleus | 42.04 | 37.71 |
| PGSC0003DMT400052841 | Potato | nucleus | 38.85 | 34.96 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 29.94 | 34.94 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 35.35 | 34.91 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 31.85 | 34.6 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 35.03 | 33.33 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 30.57 | 31.48 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 33.44 | 31.44 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 32.17 | 31.17 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 31.85 | 31.15 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 33.44 | 31.07 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 33.12 | 30.86 |
| Zm00001d047069_P001 | Maize | cytosol | 32.17 | 30.42 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 31.53 | 30.37 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 32.8 | 30.29 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 32.8 | 30.03 |
| Os10t0565500-01 | Rice | nucleus | 33.44 | 29.91 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 33.12 | 29.89 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 30.89 | 29.57 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 31.53 | 29.46 |
| Zm00001d017649_P001 | Maize | plastid | 30.89 | 29.31 |
| EES05709 | Sorghum | nucleus | 32.8 | 29.18 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 29.94 | 29.01 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 32.17 | 28.61 |
| AT1G10650.1 | Thale cress | nucleus | 25.48 | 23.6 |
| AT4G35070.1 | Thale cress | cytosol | 19.11 | 22.64 |
| AT1G45976.1 | Thale cress | cytosol | 23.25 | 22.46 |
| AT1G60610.4 | Thale cress | nucleus | 24.2 | 22.35 |
| AT5G45100.1 | Thale cress | cytosol | 20.06 | 21.43 |
| AT4G19700.1 | Thale cress | cytosol | 20.38 | 21.05 |
| AT3G12920.1 | Thale cress | nucleus | 20.7 | 19.4 |
| AT1G79110.1 | Thale cress | nucleus | 21.97 | 19.27 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:827488 | ProteinID:AEE83932.1 | ArrayExpress:AT4G17680 | EnsemblPlantsGene:AT4G17680 |
| RefSeq:AT4G17680 | TAIR:AT4G17680 | RefSeq:AT4G17680-TAIR-G | EnsemblPlants:AT4G17680.1 | TAIR:AT4G17680.1 | EMBL:AY133711 |
| ncoils:Coil | InterPro:E3ligase_BOI_like | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0031347 | InterPro:IPR001841 |
| InterPro:IPR013083 | RefSeq:NP_193503.2 | PFAM:PF13920 | PIRSF:PIRSF036836 | PO:PO:0000293 | PFscan:PS50089 |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 | UniProt:Q8L7G9 | SUPFAM:SSF57850 | UniParc:UPI00000A1B89 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8L7G9]
Coordinates
chr4:-:9842610..9844334
Molecular Weight (calculated)
35133.6 Da
IEP (calculated)
6.404
GRAVY (calculated)
-0.522
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLLSDNERI GLFSDSSMAI QAQHPSRFFF NNSNGQEASD CSLQPQDTPF TNFTKAGVDS RKRSREVYSS ALMNPPPPKP SQVIDITELL QKTPNVVSTG
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
101: LRLFHDQSQN QQQFFSSLPG DVTGKIKRQR DELDRFIQTQ GEELRRTLAD NRERRYVELL CAAEEIVGRK LRKKEAELEK ATRRHAELEA RVAHIVEEAR
201: NWQLRAATRE AEVSSLHAHL QQAIANRLDT AAKQSTFGED GGDAEEAEDA ESVYVDPERI ELIGPSCRIC RRKSATVMAL PCQHLILCNG CDVGAVRVCP
301: ICLAVKTSGV EVLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.