Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH04275 | Soybean | nucleus | 92.0 | 90.2 |
| KRH77271 | Soybean | plastid | 66.0 | 71.74 |
| KRH28216 | Soybean | nucleus | 66.57 | 70.82 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 60.86 | 63.2 |
| PGSC0003DMT400004642 | Potato | nucleus | 56.29 | 56.94 |
| Solyc08g077460.2.1 | Tomato | nucleus | 56.29 | 56.61 |
| Solyc06g061020.2.1 | Tomato | nucleus | 50.57 | 53.47 |
| PGSC0003DMT400068387 | Potato | nucleus | 51.43 | 52.63 |
| Solyc08g007120.2.1 | Tomato | nucleus | 47.43 | 50.15 |
| Bra024967.1-P | Field mustard | plastid | 34.29 | 48.58 |
| AT1G32740.1 | Thale cress | nucleus | 42.86 | 48.08 |
| AT5G47050.1 | Thale cress | nucleus | 40.29 | 47.0 |
| PGSC0003DMT400052841 | Potato | nucleus | 46.29 | 46.42 |
| CDY33511 | Canola | nucleus | 39.71 | 45.87 |
| CDY43447 | Canola | nucleus | 39.43 | 45.7 |
| Bra017511.1-P | Field mustard | nucleus | 39.43 | 45.7 |
| CDX77733 | Canola | nucleus | 39.14 | 45.67 |
| CDY51856 | Canola | cytosol | 38.57 | 44.55 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 42.0 | 44.55 |
| CDY37172 | Canola | cytosol | 38.29 | 44.37 |
| CDY09609 | Canola | cytosol | 30.86 | 43.72 |
| GSMUA_Achr1P00560_001 | Banana | nucleus | 35.71 | 43.25 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 33.14 | 43.12 |
| CDY03162 | Canola | cytosol | 39.43 | 42.86 |
| CDX90458 | Canola | cytosol | 36.86 | 42.43 |
| AT4G17680.1 | Thale cress | nucleus | 37.71 | 42.04 |
| GSMUA_Achr4P30100_001 | Banana | plastid | 36.57 | 41.97 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 37.71 | 40.74 |
| Bra022093.1-P | Field mustard | nucleus | 25.43 | 40.45 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 38.57 | 40.06 |
| Os10t0565500-01 | Rice | nucleus | 39.14 | 39.03 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 35.14 | 38.32 |
| Zm00001d047069_P001 | Maize | cytosol | 36.29 | 38.25 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 38.0 | 38.22 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 35.14 | 37.73 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 34.86 | 37.65 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 36.0 | 37.5 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 34.86 | 37.2 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 35.14 | 36.83 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 33.43 | 36.79 |
| EES05709 | Sorghum | nucleus | 36.57 | 36.26 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 34.86 | 35.88 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 34.57 | 35.8 |
| Bra012650.1-P | Field mustard | nucleus | 35.14 | 35.24 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 34.29 | 34.99 |
| Zm00001d017649_P001 | Maize | plastid | 32.57 | 34.44 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 34.0 | 33.71 |
| KRH43767 | Soybean | nucleus | 20.57 | 28.46 |
| KRH11729 | Soybean | nucleus | 24.86 | 27.8 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 25.14 | 27.5 |
| KRH24321 | Soybean | cytosol | 22.57 | 27.43 |
| KRH36722 | Soybean | nucleus | 24.29 | 27.42 |
| KRH51394 | Soybean | nucleus | 22.29 | 27.18 |
| KRH29000 | Soybean | cytosol | 22.0 | 26.83 |
| KRG89416 | Soybean | nucleus | 24.0 | 26.75 |
| KRH74575 | Soybean | cytosol | 25.71 | 26.71 |
| KRH69583 | Soybean | nucleus | 25.14 | 26.11 |
| KRH13682 | Soybean | nucleus | 25.14 | 26.11 |
| KRH60696 | Soybean | nucleus, plastid | 21.71 | 26.03 |
| KRG94235 | Soybean | cytosol | 18.29 | 25.81 |
| KRH15376 | Soybean | nucleus, plastid | 24.29 | 24.22 |
| KRH05668 | Soybean | nucleus | 22.57 | 23.1 |
Protein Annotations
| EMBL:ACUP02002856 | EnsemblPlants:KRH57556 | EnsemblPlantsGene:GLYMA_05G068400 | EntrezGene:100788122 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 |
| PANTHER:PTHR42647:SF13 | PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | ProteinID:KRH57556 | ProteinID:KRH57556.1 |
| SEG:seg | UniParc:UPI000233A846 | UniProt:I1K0Y9 | MapMan:35.1 | : | : |
Description
hypothetical protein
Coordinates
chr5:+:6978638..6980818
Molecular Weight (calculated)
38655.3 Da
IEP (calculated)
7.406
GRAVY (calculated)
-0.609
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVQAQYPSN VLLLNSRNGQ EEHEYSSLQP QPGGVVLLNQ PHMLYNINDN GSNNNNNNTN SRKRGREDPG VGNNTITAAS NVIDQFSLQS QPPQLVHLSQ
101: LHNHHQQQNN VVSTGLRLSF DDQHFQQQQR LQLHQNESQQ HRSHSSAFLS LLSQGLGSQI KQQRDEIDQL LHAQGEQLRR ALAEKRQRHY RALLSAAEEA
201: VARQLREKEA EVEMATRKNA ELEARAAKLS VEAQVWQAKA RAQEATAVSL QTKLQQTILS HGGEDPAVVG VSSAAVEGQA EDAESAYIDP DRVVAATAAR
301: PKCRGCAKRV ASVVVLPCRH LCVCTECDAH FRACPVCLTP KNSTVEVFLS
101: LHNHHQQQNN VVSTGLRLSF DDQHFQQQQR LQLHQNESQQ HRSHSSAFLS LLSQGLGSQI KQQRDEIDQL LHAQGEQLRR ALAEKRQRHY RALLSAAEEA
201: VARQLREKEA EVEMATRKNA ELEARAAKLS VEAQVWQAKA RAQEATAVSL QTKLQQTILS HGGEDPAVVG VSSAAVEGQA EDAESAYIDP DRVVAATAAR
301: PKCRGCAKRV ASVVVLPCRH LCVCTECDAH FRACPVCLTP KNSTVEVFLS
001: MAVQAQHHSS NLLFLNKRNG KEKEHSNFTL QSQAAGDFLD QTNMLFNNGS SNQRKRRRET NNHQLLPMQS HQFPQVIDLS LLHNYNHPPS NMVHTGLRLF
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
101: SGEDQAQKIS HLSEDVFAAH INRQSEELDE FLHAQAEELR RTLAEKRKMH YKALLGAVEE SLVRKLREKE VEIERATRRH NELVARDSQL RAEVQVWQER
201: AKAHEDAAAS LQSQLQQAVN QCAGGCVSAQ DSRAAEEGLL CTTISGVDDA ESVYVDPERV KRPNCKACRE REATVVVLPC RHLSICPGCD RTALACPLCL
301: TLRNSSVEAI FC
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q8LCK5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.