CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	mitochondrion
EpiLoc:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95394
KRH01286
KRH45047
KRH61471
KRH67075

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G22840.1	KRG95394	AT4G01920.1	21798944
AT1G22840.1	KRH67075	AT4G01920.1	21798944
AT1G22840.1	KRH61471	AT4G08150.1	21798944
AT4G10040.1	KRH01286	AT3G29575.1	21798944
AT4G10040.1	KRH45047	AT3G29575.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00982	Soybean	cytosol	99.11	99.11
GSMUA_Achr6P18470_001	Banana	cytosol	94.64	94.64
Bra000699.1-P	Field mustard	cytosol	93.75	93.75
Bra024541.1-P	Field mustard	cytosol	93.75	93.75
CDX90744	Canola	cytosol	93.75	93.75
CDY04780	Canola	cytosol	93.75	93.75
CDY21393	Canola	cytosol	93.75	93.75
Bra037901.1-P	Field mustard	cytosol	83.04	93.0
Bra012346.1-P	Field mustard	cytosol	92.86	92.86
CDY05083	Canola	cytosol	92.86	92.86
CDY12506	Canola	cytosol	92.86	92.86
CDY25756	Canola	cytosol	92.86	92.86
AT4G10040.1	Thale cress	cytosol	91.96	91.96
GSMUA_Achr11P...	Banana	cytosol	91.96	91.15
KRH77736	Soybean	plastid	91.96	91.15
KRH27791	Soybean	cytosol	91.07	90.27
GSMUA_Achr5P01400_001	Banana	cytosol	90.18	90.18
GSMUA_Achr7P23550_001	Banana	cytosol	89.29	89.29
AT1G22840.1	Thale cress	cytosol	90.18	88.6
CDX99521	Canola	cytosol	83.04	87.74
KRH16722	Soybean	mitochondrion	29.46	36.67

Protein Annotations

Gene3D:1.10.760.10	EntrezGene:100817799	MapMan:2.4.4.1	EMBL:ACUP02006028	EMBL:BT097735	UniProt:C6TJ91
InterPro:Cyt_c-like_dom	InterPro:Cyt_c-like_dom_sf	InterPro:Cyt_c_1A/1B	EnsemblPlantsGene:GLYMA_09G246700	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0005758	GO:GO:0006091	GO:GO:0006122	GO:GO:0006123	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009055	GO:GO:0009987	GO:GO:0016020	GO:GO:0020037	GO:GO:0046872
GO:GO:0055114	GO:GO:0070469	InterPro:IPR009056	InterPro:IPR036909	EnsemblPlants:KRH40245	ProteinID:KRH40245
ProteinID:KRH40245.1	PFAM:PF00034	PRINTS:PR00604	PFscan:PS51007	PANTHER:PTHR11961	PANTHER:PTHR11961:SF9
SUPFAM:SSF46626	UniParc:UPI0001B165B5	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:46835178..46837800

Molecular Weight (calculated)

12330.7 Da

IEP (calculated)

9.779

GRAVY (calculated)

-0.721

Length

112 amino acids

Sequence
(BLAST)

001: MASFDEAPPG NSKNGEKIFK TKCAQCHTVD KGAGHKQGPN LNGLFGRQSG TTPGYSYSTA NKNMAVIWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQER
101: ADLIAYLKES TA

Best Arabidopsis Sequence Match ( AT4G10040.1 )
(BLAST)

001: MASFDEAPPG NPKAGEKIFR TKCAQCHTVE KGAGHKQGPN LNGLFGRQSG TTPGYSYSAA NKSMAVNWEE KTLYDYLLNP KKYIPGTKMV FPGLKKPQDR
101: ADLIAYLKEG TA

Arabidopsis Description

CYTC-2CYTC-2 [Source:UniProtKB/TrEMBL;Acc:A0A178UZN3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.