Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69583 | Soybean | nucleus | 95.25 | 95.25 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 67.66 | 64.59 |
| PGSC0003DMT400035059 | Potato | nucleus | 58.75 | 59.64 |
| Solyc05g005210.2.1 | Tomato | nucleus | 57.57 | 58.08 |
| AT1G10650.1 | Thale cress | nucleus | 56.38 | 56.05 |
| Bra019910.1-P | Field mustard | nucleus, plastid | 49.85 | 55.26 |
| Bra031495.1-P | Field mustard | nucleus | 52.52 | 54.13 |
| CDY24542 | Canola | nucleus | 52.52 | 54.13 |
| CDY37958 | Canola | cytosol, plastid | 54.3 | 53.98 |
| CDX93396 | Canola | cytosol | 53.71 | 53.87 |
| AT1G60610.4 | Thale cress | nucleus | 54.3 | 53.82 |
| CDY20963 | Canola | nucleus | 53.12 | 52.96 |
| CDY20611 | Canola | nucleus | 53.41 | 52.79 |
| Bra018428.1-P | Field mustard | nucleus | 52.82 | 52.66 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 40.65 | 39.94 |
| TraesCSU01G113400.1 | Wheat | nucleus | 41.25 | 39.6 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 40.36 | 38.97 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 41.25 | 37.67 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 39.17 | 37.61 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 38.87 | 36.8 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 39.76 | 36.71 |
| KRH05668 | Soybean | nucleus | 32.05 | 31.58 |
| KRH15376 | Soybean | nucleus, plastid | 32.05 | 30.77 |
| KRH77271 | Soybean | plastid | 27.3 | 28.57 |
| KRH28216 | Soybean | nucleus | 26.11 | 26.75 |
| KRH43767 | Soybean | nucleus | 19.88 | 26.48 |
| KRH04275 | Soybean | nucleus | 27.3 | 25.77 |
| KRH57556 | Soybean | nucleus | 26.71 | 25.71 |
| KRG89416 | Soybean | nucleus | 23.74 | 25.48 |
| KRH36722 | Soybean | nucleus | 23.15 | 25.16 |
| KRH50476 | Soybean | cytosol, nucleus, plastid | 23.44 | 24.69 |
| KRH11729 | Soybean | nucleus | 22.85 | 24.6 |
| KRH51394 | Soybean | nucleus | 20.77 | 24.39 |
| KRH60696 | Soybean | nucleus, plastid | 20.47 | 23.63 |
| KRH24321 | Soybean | cytosol | 19.58 | 22.92 |
| KRG94235 | Soybean | cytosol | 16.62 | 22.58 |
| KRH29000 | Soybean | cytosol | 18.99 | 22.3 |
| KRH13682 | Soybean | nucleus | 21.36 | 21.36 |
Protein Annotations
| EntrezGene:100791550 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:ACUP02000049 | ncoils:Coil | InterPro:E3ligase_BOI_like |
| EnsemblPlantsGene:GLYMA_01G029500 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0043565 |
| UniProt:I1J580 | InterPro:IPR001841 | InterPro:IPR013083 | EnsemblPlants:KRH74575 | ProteinID:KRH74575 | ProteinID:KRH74575.1 |
| ProteinID:KRH74576.1 | ProteinID:KRH74577.1 | ProteinID:KRH74578.1 | PFAM:PF13920 | PIRSF:PIRSF036836 | PFscan:PS50089 |
| PANTHER:PTHR42647 | PANTHER:PTHR42647:SF8 | UniParc:UPI0002336EEC | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
hypothetical protein
Coordinates
chr1:+:3130778..3135499
Molecular Weight (calculated)
37880.7 Da
IEP (calculated)
5.451
GRAVY (calculated)
-0.609
Length
337 amino acids
Sequence
(BLAST)
(BLAST)
001: MLGGNNGNRL LPVFLDETQF RHQTNVSNQL QLFGNLQAGC SVDPVNYFGN EHISSMIQPN KQSKEMEDIS KQRLQISLNY NVHQDDADQL ASIPNPNPVS
101: TGLRLSYDDD ERNSSVTSAS GSMSATPSII LSFGDNIRTE LDRQQEELDQ YVKLQKEQLS KGVRDMKQKH VAALLTSIEK GINTKLKEKD VEIENMNRKN
201: RELAERIKQV AVEAQSWHYR AKYNESVVNT LRNNLQQAIS QGAEQGKEGF GESEVDDDAS YIDPNNFLNI PAAPINSTHK SYQDMENLTC RACKTKTVSM
301: LLMPCRHLCL CKDCEGFINV CPVCQLIKTA SVEVYLS
101: TGLRLSYDDD ERNSSVTSAS GSMSATPSII LSFGDNIRTE LDRQQEELDQ YVKLQKEQLS KGVRDMKQKH VAALLTSIEK GINTKLKEKD VEIENMNRKN
201: RELAERIKQV AVEAQSWHYR AKYNESVVNT LRNNLQQAIS QGAEQGKEGF GESEVDDDAS YIDPNNFLNI PAAPINSTHK SYQDMENLTC RACKTKTVSM
301: LLMPCRHLCL CKDCEGFINV CPVCQLIKTA SVEVYLS
001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF
Arabidopsis Description
At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.