CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra031495.1-P	Field mustard	nucleus	100.0	100.0
CDY34127	Canola	extracellular	18.35	100.0
AT1G60610.4	Thale cress	nucleus	82.57	79.41
CDY20611	Canola	nucleus	67.89	65.1
CDY20963	Canola	nucleus	66.67	64.5
CDY37958	Canola	cytosol, plastid	66.67	64.31
CDX93396	Canola	cytosol	65.44	63.69
KRH69583	Soybean	nucleus	54.43	52.82
KRH74575	Soybean	cytosol	54.13	52.52
VIT_01s0127g00360.t01	Wine grape	nucleus	54.43	50.42
PGSC0003DMT400035059	Potato	nucleus	50.46	49.7
Solyc05g005210.2.1	Tomato	nucleus	49.54	48.5
Os02t0130300-02	Rice	cytosol, nucleus, plastid	35.17	33.53
TraesCSU01G113400.1	Wheat	nucleus	35.78	33.33
TraesCS6A01G084400.1	Wheat	cytosol, nucleus, plastid	35.47	33.05
TraesCS6B01G118100.1	Wheat	cytosol, nucleus, plastid	35.17	32.95
KXG29382	Sorghum	cytosol, mitochondrion, peroxisome, plastid	36.39	32.6
Zm00001d015130_P001	Maize	cytosol, nucleus, plastid	35.47	32.58
CDY17103	Canola	cytosol	29.36	32.43
HORVU6Hr1G015410.5	Barley	cytosol, mitochondrion, nucleus	35.78	31.71
CDY06767	Canola	cytosol	28.13	30.26
CDY40841	Canola	cytosol	26.91	29.43
CDY33511	Canola	nucleus	26.91	29.04
CDX77733	Canola	nucleus	26.61	29.0
CDY17048	Canola	cytosol	27.52	28.94
CDY43447	Canola	nucleus	25.69	27.81
CDY37172	Canola	cytosol	25.38	27.48
CDY51856	Canola	cytosol	25.38	27.39
CDX94520	Canola	cytosol	19.27	26.92
CDY07541	Canola	cytosol	19.27	26.92
CDY21311	Canola	cytosol	19.27	26.92
CDY09318	Canola	cytosol	19.27	26.92
CDY03162	Canola	cytosol	25.99	26.4
CDY09609	Canola	cytosol	19.88	26.32
CDY71607	Canola	cytosol	22.02	23.53
CDX90458	Canola	cytosol	21.71	23.36
CDY01615	Canola	cytosol	21.71	23.28
CDY71192	Canola	cytosol	19.88	23.21
CDY51918	Canola	cytosol	20.18	23.0
CDY13070	Canola	cytosol	19.27	22.58
CDY26402	Canola	cytosol	20.18	22.3
CDX88507	Canola	nucleus	20.18	22.15
CDY64561	Canola	nucleus	22.63	21.76
CDY18062	Canola	cytosol	18.65	21.63
CDY46345	Canola	cytosol	18.65	21.63
CDY24237	Canola	nucleus	21.41	21.6
CDX82568	Canola	nucleus	22.32	21.47
CDX87407	Canola	nucleus	20.49	21.2
CDX79294	Canola	nucleus	19.57	21.05
CDY43390	Canola	cytosol	20.8	20.92
CDX69109	Canola	nucleus	12.84	20.49
CDY40647	Canola	cytosol	14.68	20.43
CDY52651	Canola	cytosol	13.76	20.36
CDX76311	Canola	cytosol	15.6	20.16
CDX72513	Canola	cytosol	14.37	20.09
CDY15019	Canola	cytosol	15.29	19.92
CDX73168	Canola	cytosol	15.29	19.92
CDY17506	Canola	cytosol, nucleus, plastid	15.29	19.76
CDY23552	Canola	cytosol	8.56	12.9

Protein Annotations

EnsemblPlants:CDY24542	EnsemblPlantsGene:GSBRNA2T00026859001	Gene3D:3.30.40.10	GO:A0A078GHB4	InterPro:E3ligase_BOI_like	InterPro:IPR013083
InterPro:Znf_RING/FYVE/PHD	KEGG:00220+6.3.2.-	KEGG:00261+6.3.2.-	KEGG:00380+6.3.2.-	ncoils:Coil	PANTHER:PTHR42647
PANTHER:PTHR42647:SF8	PFAM:PF13920	PIRSF:PIRSF036836	ProteinID:CDY24542	ProteinID:CDY24542.1	SEG:seg
UniParc:UPI0002544C8E	UniPathway:UPA00144	UniProt:A0A078GHB4	MapMan:35.1	:	:

Description

BnaA01g22460DBnaA01g22460D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GHB4]

Coordinates

chrLK032160:-:535672..537979

Molecular Weight (calculated)

37024.5 Da

IEP (calculated)

7.654

GRAVY (calculated)

-0.722

Length

327 amino acids

Sequence
(BLAST)

001: MLGGNNETPL PQDSQFQYQT NSSLNQLHLL GTMRAGCTID PINYFANDNL ATMSRNNSKR ARETETNHSI QRQQKLQSSL NYNYNNNSVA QDEAPKQNLV
101: STGLRLSYDN DERNSCANGS ITTPMFQSLG DSIRLDLDRQ KEDLDQFLKF QGNQLAKGVR DIKQRHVTSF VTALEKDVRK KLQEKDQEIE NMNKKNRELV
201: EKIKQVAVES QNWHYRAKYN ESVVNALKVN LQQVMSHGNN TNPCGVFAVE EGYGDSEIDD KAASYNYMNI PGMPNTGMRC KSCNVKEVSV LLVPCRHLSL
301: CKDCDVFTGF CPVCQSFKTS SVQVFFS

Best Arabidopsis Sequence Match ( AT1G60610.3 )
(BLAST)

001: MLGGNNDNPV PQVLMNDSQF RYQSNTSLNQ LHLLGTMRAG CTIDPVNYFA NDNLAPMMRL NSTRGRETEN NNIMQRQQKL QISLNYNYNN NNTVVQDEVP
101: KQNLVSTGLR LSYDDDERNS SVTSANGSIT TPVYQSLGDN IRLDLNRQND ELDQFIKFRA DQMAKGVRDI KQRHVTSFVT ALEKDVSKKL QEKDHEIESM
201: NKKNRELVDK IKQVAVEAQN WHYKAKYNES VVNALKVNLQ QVMSHGNDNN AVGGGVADHH QMKEGFGDSE IDDEAASYNY LNIPGMPSTG MRCKLCNVKN
301: VSVLLVPCRH LSLCKDCDVF TGVCPVCQSL KTSSVQVFFF

Arabidopsis Description

At1g60610 [Source:UniProtKB/TrEMBL;Acc:Q4TU35]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.