Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g005210.2.1 | Tomato | nucleus | 96.69 | 96.11 |
| KRH69583 | Soybean | nucleus | 60.84 | 59.94 |
| KRH74575 | Soybean | cytosol | 59.64 | 58.75 |
| VIT_01s0127g00360.t01 | Wine grape | nucleus | 60.84 | 57.22 |
| AT1G10650.1 | Thale cress | nucleus | 53.92 | 52.8 |
| CDX93396 | Canola | cytosol | 52.41 | 51.79 |
| Bra019910.1-P | Field mustard | nucleus, plastid | 47.29 | 51.64 |
| CDY37958 | Canola | cytosol, plastid | 52.71 | 51.62 |
| CDY20963 | Canola | nucleus | 52.41 | 51.48 |
| Bra018428.1-P | Field mustard | nucleus | 52.11 | 51.18 |
| AT1G60610.4 | Thale cress | nucleus | 52.11 | 50.88 |
| CDY20611 | Canola | nucleus | 52.11 | 50.73 |
| CDY24542 | Canola | nucleus | 49.7 | 50.46 |
| Bra031495.1-P | Field mustard | nucleus | 49.7 | 50.46 |
| PGSC0003DMT400046745 | Potato | nucleus | 44.28 | 44.28 |
| TraesCSU01G113400.1 | Wheat | nucleus | 40.66 | 38.46 |
| TraesCS6A01G084400.1 | Wheat | cytosol, nucleus, plastid | 39.46 | 37.32 |
| TraesCS6B01G118100.1 | Wheat | cytosol, nucleus, plastid | 39.16 | 37.25 |
| KXG29382 | Sorghum | cytosol, mitochondrion, peroxisome, plastid | 39.76 | 36.16 |
| HORVU6Hr1G015410.5 | Barley | cytosol, mitochondrion, nucleus | 39.76 | 35.77 |
| Os02t0130300-02 | Rice | cytosol, nucleus, plastid | 36.14 | 34.99 |
| Zm00001d015130_P001 | Maize | cytosol, nucleus, plastid | 37.35 | 34.83 |
| PGSC0003DMT400020551 | Potato | nucleus | 31.93 | 28.34 |
| PGSC0003DMT400004642 | Potato | nucleus | 29.22 | 28.03 |
| PGSC0003DMT400068387 | Potato | nucleus | 28.31 | 27.49 |
| PGSC0003DMT400052841 | Potato | nucleus | 28.31 | 26.93 |
| PGSC0003DMT400015829 | Potato | nucleus | 18.07 | 23.81 |
| PGSC0003DMT400062617 | Potato | nucleus | 19.88 | 22.0 |
| PGSC0003DMT400068728 | Potato | mitochondrion, nucleus | 17.17 | 21.59 |
| PGSC0003DMT400026783 | Potato | cytosol, mitochondrion, nucleus, plastid, vacuole | 20.18 | 20.74 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035059 | EnsemblPlantsGene:PGSC0003DMG400013483 | EntrezGene:102587845 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF8 |
| PFAM:PF13920 | PFscan:PS50089 | PGSC:PGSC0003DMG400013483 | PIRSF:PIRSF036836 | RefSeq:XP_006356429.1 | RefSeq:XP_015168325.1 |
| SEG:seg | UniParc:UPI00029645C6 | UniProt:M1B1R8 | MapMan:35.1 | : | : |
Description
ATP binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013483]
Coordinates
chr5:+:8844712..8850667
Molecular Weight (calculated)
36813.7 Da
IEP (calculated)
6.613
GRAVY (calculated)
-0.548
Length
332 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRGNGTHTE LPIFVDANGF QYPPSAPNQL QLFGSLPLGS TADPVNYFVN EHATPMIRHN QGREAGVSRQ QKLQFSLNHN LVHDDTERPA NVPAQNPVST
101: GLKLSYDDDE PNSSVSSASG SINASASVIM SLGDNIKTEM ERQKKEFDQY LKTQEETWAR GVRDIKQRHM ASLLSAVEKN VGTKLQEKDI ELENINRKNR
201: ELVERMKQVT AEAQNWCYRA KCNESLVNTL KTNLQQAMQS AEQGKEGMGD NELDDAASYI DPNNRLSNIP SGSGKCTSTK KGIICKVCKL KEVSVLLMPC
301: RHLCLCKDCE GLVSVCPICQ LMTTASVEVF LS
101: GLKLSYDDDE PNSSVSSASG SINASASVIM SLGDNIKTEM ERQKKEFDQY LKTQEETWAR GVRDIKQRHM ASLLSAVEKN VGTKLQEKDI ELENINRKNR
201: ELVERMKQVT AEAQNWCYRA KCNESLVNTL KTNLQQAMQS AEQGKEGMGD NELDDAASYI DPNNRLSNIP SGSGKCTSTK KGIICKVCKL KEVSVLLMPC
301: RHLCLCKDCE GLVSVCPICQ LMTTASVEVF LS
001: MLSGNNGNTA PPVFMNENQL QYQTNLRSNQ LHLLGNMGGG CTVDPVNYFA NDNLVPMIRP NKRGREAESI SNNIQRQQQK LQMSLNYNYN NTSVREEVPK
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
101: ENLVSTGLRL SYDDDEHNSS VTSASGSILA ASPIFQSLDD SLRIDLHRQK DEFDQFIKIQ AAQMAKGVRD MKQRHIASFL TTLEKGVSKK LQEKDHEIND
201: MNKKNKELVE RIKQVAMEAQ NWHYRAKYNE SVVNVLKANL QQAMSHNNSV IAAADQGKEG FGDSEIDDAA SSYIDPNNNN NNNMGIHQRM RCKMCNVKEV
301: SVLIVPCRHL SLCKECDVFT KICPVCKSLK SSCVQVFFS
Arabidopsis Description
Putative S-ribonuclease binding protein SBP1 [Source:UniProtKB/TrEMBL;Acc:Q84JF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.